Region 109-218 2 PWM
- Residues
- 110 aa
- Domains
- PF01388 · ARID/BRIGHT DNA binding domain
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 1KQQ, 2OEH
- Sources
- Predicted = Low
Transcription factor
H0Y3S9 - ARID1B
AT-rich interaction domain 1B
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 273 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_H0Y3S9_H0Y3S9_HUMAN:109:209_1kqq_A_1 | ModCRE | Homology model | TATTTTTGTTATT | Region 109-209 · 1 3D model | Open · Scan | |
| TFS_tr_H0Y3S9_H0Y3S9_HUMAN:133:218_2oeh_A_1 | ModCRE | Homology model | AAGTACGAAACAA | Region 133-218 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
273 aa
109-218
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models
2 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 109-2182 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_H0Y3S9_H0Y3S9_HUMAN:109:209_1kqq_A_1 | 1kqq | 109-209 | View model · PDB |
| Predicted = Low | TFS_tr_H0Y3S9_H0Y3S9_HUMAN:133:218_2oeh_A_1 | 2oeh | 133-218 | View model · PDB |
Model-summary evidence imported for this region.
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 123-207 | PF01388 | ARID/BRIGHT DNA binding domain | overlaps 109-218 |