Region 156-224 4 PWM
- Residues
- 69 aa
- Domains
- PF00439 · Bromodomain
- 3D models
- 4 active PDBs · 4 summary rows
- Templates
- 7W9V, 8HAG, 8HAI, 8HAK
- Sources
- Predicted = Low
Transcription factor
H0Y5B5 - PBRM1
Protein polybromo-1 (BRG1-associated factor 180)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1085 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_7w9v_K_1 | ModCRE | Homology model | GAGGGCCCT | Region 156-224 · 1 3D model | Open · Scan | |
| TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hag_K_1 | ModCRE | Homology model | GGAATTTGG | Region 156-224 · 1 3D model | Open · Scan | |
| TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hai_K_1 | ModCRE | Homology model | GGGGCTTTT | Region 156-224 · 1 3D model | Open · Scan | |
| TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hak_N_1 | ModCRE | Homology model | ATTTTTG | Region 156-224 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
1085 aa
156-224
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
4 active PDB models
4 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 156-2244 models · 4 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_7w9v_K_1 | 7w9v | 156-224 | View model · PDB |
| Predicted = Low | TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hag_K_1 | 8hag | 156-224 | View model · PDB |
| Predicted = Low | TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hai_K_1 | 8hai | 156-224 | View model · PDB |
| Predicted = Low | TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hak_N_1 | 8hak | 156-224 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 8hag | 156:224 | 156 | 224 | P:K · DNA:I,J | 34.8% / 56.5% | 13 | View · PDB TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hag_K_1 |
| 2 | 8hak | 156:224 | 156 | 224 | P:N · DNA:J,K | 34.8% / 56.5% | 13 | View · PDB TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hak_N_1 |
| 3 | 8hai | 156:224 | 156 | 224 | P:K · DNA:I,J | 34.8% / 56.5% | 12 | View · PDB TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_8hai_K_1 |
| 4 | 7w9v | 156:224 | 156 | 224 | P:K · DNA:I,J | 34.8% / 56.5% | 12 | View · PDB TFS_tr_H0Y5B5_H0Y5B5_HUMAN:156:224_7w9v_K_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 11-82 | PF00439 | Bromodomain | No overlap with loaded model regions |
| 142-218 | PF00439 | Bromodomain | overlaps 156-224 |
| 344-416 | PF00439 | Bromodomain | No overlap with loaded model regions |
| 500-571 | PF00439 | Bromodomain | No overlap with loaded model regions |
| 637-708 | PF00439 | Bromodomain | No overlap with loaded model regions |
| 748-825 | PF00439 | Bromodomain | No overlap with loaded model regions |
| 915-1032 | PF01426 | BAH domain | No overlap with loaded model regions |