ModCRE DB

Transcription factor

H0Y5R1 - BMAL2

Basic helix-loop-helix ARNT like 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 588 aa

12 Generated PWM 20 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M04125_2.00 NN 70-40% CisBP GTCACATGAC 52.8% identity Open · Scan
MA0603.1 NN 70-40% JASPAR GGTCACGTGC 52.3% identity Open · Scan
M03615_2.00 NN 70-40% CisBP GTCACGTGAC 51.3% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:55:115_1mdy_B_1 ModCRE Homology model GACGCACGTGCGAC Region 55-115 · 1 3D model Open · Scan
DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:114_4h10_A_1 ModCRE Homology model CGCACACGTGGGCA Region 60-114 · 1 3D model Open · Scan
TFS_tr_H0Y5R1_H0Y5R1_HUMAN:57:424_7xi3_A_1 ModCRE Homology model GCTAGCGCGGC Region 57-424 · 1 3D model Open · Scan
TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:239_5v0l_A_1 ModCRE Homology model CTACGGGCCCC Region 60-239 · 1 3D model Open · Scan
TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:305_5nj8_B_1 ModCRE Homology model GGGCACGCGCGT Region 60-305 · 1 3D model Open · Scan
TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:422_5sy7_A_1 ModCRE Homology model TGCGACGCAGCCCCGTAC Region 60-422 · 1 3D model Open · Scan
TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_4zpr_A_1 ModCRE Homology model GGCACCACGTGCGCATT Region 60-424 · 1 3D model Open · Scan
TFS_tr_H0Y5R1_H0Y5R1_HUMAN:61:113_4atk_B_1 ModCRE Homology model CCATCCATGGGGGCCC Region 61-113 · 1 3D model Open · Scan
TFS_tr_H0Y5R1_H0Y5R1_HUMAN:64:113_4ati_A_1 ModCRE Homology model GGGCACACCGCGGTGC Region 64-113 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 588 aa
55-424

Region 55-424 9 PWM

Residues
370 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain PF00989 · PAS fold PF14598 · PAS domain
3D models
20 active PDBs · 10 summary rows
Templates
1AM9, 1MDY, 4ATI, 4ATK, 4H10, 4ZPK, 4ZPR, 5NJ8, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
20 active PDB models 10 summary rows
Region 55-42420 models · 10 summary rows
Actions
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:55:115_1mdy_B_1 1mdy 55-115 View model · PDB
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:114_4h10_A_1 4h10 60-114 View model · PDB
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:422_5sy7_A_1 5sy7 60-422 View model · PDB
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_4zpk_A_1 4zpk 60-424 View model · PDB
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_7xi4_A_1 7xi4 60-424 View model · PDB
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_8osk_N_1 8osk 60-424 View model · PDB
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_8osl_N_1 8osl 60-424 View model · PDB
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:61:113_1am9_B_1 1am9 61-113 View model · PDB
Predicted = Low DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:61:113_1am9_D_1 1am9 61-113 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:57:424_7xi3_A_1 7xi3 57-424 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:239_5v0l_A_1 5v0l 60-239 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:305_5nj8_B_1 5nj8 60-305 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:422_5sy7_A_1 5sy7 60-422 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_4zpk_A_1 4zpk 60-424 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_4zpr_A_1 4zpr 60-424 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_7xi4_A_1 7xi4 60-424 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_8osk_N_1 8osk 60-424 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_8osl_N_1 8osl 60-424 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:61:113_4atk_B_1 4atk 61-113 View model · PDB
Predicted = Low TFS_tr_H0Y5R1_H0Y5R1_HUMAN:64:113_4ati_A_1 4ati 64-113 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8osl 52:424 60,60 424,109 P:N,P · DNA:I,J 54.3% / 66.6% 97,100 View · PDB DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_8osl_N_1
1 8osl 52:424 60,60 424,109 P:N,P · DNA:I,J 54.3% / 66.6% 97,100 View · PDB TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_8osl_N_1
2 8osk 52:424 61,60 424,424 P:M,N · DNA:I,J 54.3% / 66.6% 94,99 View · PDB DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_8osk_N_1
2 8osk 52:424 61,60 424,424 P:M,N · DNA:I,J 54.3% / 66.6% 94,99 View · PDB TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_8osk_N_1
3 7xi4 52:424 60,69 424,196 P:A,B · DNA:C,D 36.9% / 53.1% 97,40 View · PDB DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_7xi4_A_1
3 7xi4 52:424 60,69 424,196 P:A,B · DNA:C,D 36.9% / 53.1% 97,40 View · PDB TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_7xi4_A_1
5 5sy7 52:424 60,138 422,195 P:A,B · DNA:C,D 35.7% / 50.9% 98,20 View · PDB DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:422_5sy7_A_1
4 4zpk 52:424 60,55 424,421 P:A,B · DNA:C,D 35.5% / 50.9% 97,93 View · PDB DIMER_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_4zpk_A_1
5 4zpk 52:424 60,55 424,421 P:A,B · DNA:C,D 35.5% / 50.9% 97,93 View · PDB TFS_tr_H0Y5R1_H0Y5R1_HUMAN:60:424_4zpk_A_1
4 7xi3 52:424 57 424 P:A · DNA:C,D 34.7% / 53.7% 98 View · PDB TFS_tr_H0Y5R1_H0Y5R1_HUMAN:57:424_7xi3_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
61-113PF00010Helix-loop-helix DNA-binding domainoverlaps 55-424
135-196PF00989PAS foldoverlaps 55-424
322-424PF14598PAS domainoverlaps 55-424