Region 213-255 1 PWM
- Residues
- 43 aa
- Domains
- PF00046 · Homeodomain
- 3D models
- 1 active PDB · 1 summary row
- Templates
- 2LKX
- Sources
- Predicted = Low
Transcription factor
H0Y6F5 - ZHX3
Zinc fingers and homeoboxes protein 3 (Zinc finger and homeodomain protein 3)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 678 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_H0Y6F5_H0Y6F5_HUMAN:213:255_2lkx_A_1 | ModCRE | Homology model | ATAAAAATTATTT | Region 213-255 · 1 3D model | Open · Scan | |
| TFS_tr_H0Y6F5_H0Y6F5_HUMAN:330:374_3d1n_L_1 | ModCRE | Homology model | GTGACGAATTTCAG | Region 330-374 · 1 3D model | Open · Scan | |
| TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1apl_C_1 | ModCRE | Homology model | ATAATTTTTTAAAAATTATT | Region 331-375 · 1 3D model | Open · Scan | |
| TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1k61_B_1 | ModCRE | Homology model | ACAATTTTAATTTTTT | Region 331-375 · 1 3D model | Open · Scan | |
| TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1mnm_D_1 | ModCRE | Homology model | CAAATAAAATAAGAAAAATAAAAAA | Region 331-375 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
678 aa
213-255
330-375
Region 330-375 4 PWM
- Residues
- 46 aa
- Domains
- PF00046 · Homeodomain
- 3D models
- 9 active PDBs · 9 summary rows
- Templates
- 1APL, 1K61, 1MNM, 3D1N
- Sources
- Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models
10 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 213-2551 model · 1 summary row
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_H0Y6F5_H0Y6F5_HUMAN:213:255_2lkx_A_1 | 2lkx | 213-255 | View model · PDB |
Model-summary evidence imported for this region.
Region 330-3759 models · 9 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:330:374_3d1n_L_1 | 3d1n | 330-374 | View model · PDB |
| Predicted = Low | DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1apl_C_1 | 1apl | 331-375 | View model · PDB |
| Predicted = Low | DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1k61_A_1 | 1k61 | 331-375 | View model · PDB |
| Predicted = Low | DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1k61_B_1 | 1k61 | 331-375 | View model · PDB |
| Predicted = Low | DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1mnm_D_1 | 1mnm | 331-375 | View model · PDB |
| Predicted = Low | TFS_tr_H0Y6F5_H0Y6F5_HUMAN:330:374_3d1n_L_1 | 3d1n | 330-374 | View model · PDB |
| Predicted = Low | TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1apl_C_1 | 1apl | 331-375 | View model · PDB |
| Predicted = Low | TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1k61_B_1 | 1k61 | 331-375 | View model · PDB |
| Predicted = Low | TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1mnm_D_1 | 1mnm | 331-375 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 2 | 1mnm | 206:265 | 331,331 | 375,375 | P:C,D · DNA:E,F | 39.6% / 58.3% | 58,58 | View · PDB DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1mnm_D_1 |
| 3 | 1mnm | 206:265 | 331,331 | 375,375 | P:C,D · DNA:E,F | 39.6% / 58.3% | 58,58 | View · PDB TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1mnm_D_1 |
| 3 | 1k61 | 206:265 | 331,331 | 375,375 | P:B,D · DNA:E,F | 39.6% / 58.3% | 76,77 | View · PDB DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1k61_B_1 |
| 4 | 1k61 | 206:265 | 331,331 | 375,375 | P:B,D · DNA:E,F | 39.6% / 58.3% | 76,77 | View · PDB TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1k61_B_1 |
| 4 | 1apl | 206:265 | 331,331 | 375,375 | P:C,D · DNA:A,B | 39.6% / 58.3% | 76,77 | View · PDB DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1apl_C_1 |
| 5 | 1apl | 206:265 | 331,331 | 375,375 | P:C,D · DNA:A,B | 39.6% / 58.3% | 76,77 | View · PDB TFS_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1apl_C_1 |
| 5 | 1k61 | 206:265 | 331,331 | 375,375 | P:A,D · DNA:E,F | 39.6% / 58.3% | 75,77 | View · PDB DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:331:375_1k61_A_1 |
| 1 | 3d1n | 206:265 | 330,330 | 374,374 | P:K,L · DNA:C,D | 35.6% / 55.6% | 30,31 | View · PDB DIMER_tr_H0Y6F5_H0Y6F5_HUMAN:330:374_3d1n_L_1 |
| 2 | 3d1n | 206:265 | 330,330 | 374,374 | P:K,L · DNA:C,D | 35.6% / 55.6% | 30,31 | View · PDB TFS_tr_H0Y6F5_H0Y6F5_HUMAN:330:374_3d1n_L_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 27-68 | PF00046 | Homeodomain | No overlap with loaded model regions |
| 211-259 | PF00046 | Homeodomain | overlaps 213-255 |
| 329-375 | PF00046 | Homeodomain | overlaps 330-375 |
| 559-599 | PF11569 | Homeodomain leucine-zipper encoding, Homez | No overlap with loaded model regions |