ModCRE DB

Transcription factor

H0Y8E2 - NR1I2

Nuclear receptor subfamily 1 group I member 2 (Orphan nuclear receptor PXR) (Pregnane X receptor)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 397 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M09283_2.00 NN 70+% CisBP TGAGGTCAAAAAAGTTCAG 91.4% identity Open · Scan
MA1533.1 NN 70+% JASPAR ATGAACTCGATGAACTC 91.2% identity Open · Scan
M09275_2.00 NN 70+% CisBP GGGTCACTTCAGGTCAG 75.0% identity Open · Scan
Nearest Neighbor (70% - 40%)12
MotifPredictionSourceDNA bindingSupportLogoActions
M03940_2.00 NN 70-40% CisBP TAAGTGCACGTGTACCCA 56.3% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 55.5% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 54.2% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 52.7% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 52.7% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 51.3% identity Open · Scan
M02411_2.00 NN 70-40% CisBP AGGACATC 50.7% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 50.0% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 50.0% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 50.0% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 50.0% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 397 aa
38-131

Region 38-131 0 PWM

Residues
94 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1KB6
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 38-1311 model
Actions
Predicted = Low DIMER_H0Y8E2:38:131_1kb6_B_1 1kb6 38-131 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
40-109PF00105Double treble clef zinc finger, C4 typeoverlaps 38-131
205-374PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions