ModCRE DB

Transcription factor

H0YAV4 - TRPS1

Zinc finger transcription factor Trps1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 271 aa

26 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M04875_2.00 NN 70-40% CisBP GAGATAACGC 64.2% identity Open · Scan
MA0482.1 NN 70-40% JASPAR TCTTATCTCCC 64.2% identity Open · Scan
MA0482.2 NN 70-40% JASPAR TTCCTTATCTTT 64.2% identity Open · Scan
MA1104.1 NN 70-40% JASPAR AAAAGATAAGAAA 62.5% identity Open · Scan
M00166_2.00 NN 70-40% CisBP TAGAGATAAG 62.2% identity Open · Scan
M10587_2.00 NN 70-40% CisBP AGAGATAAGA 62.2% identity Open · Scan
MA0036.1 NN 70-40% JASPAR GGATA 62.2% identity Open · Scan
MA0037.1 NN 70-40% JASPAR AGATAG 62.2% identity Open · Scan
M01545_2.00 NN 70-40% CisBP AGATAAG 60.0% identity Open · Scan
M10581_2.00 NN 70-40% CisBP GCAGATAACA 60.0% identity Open · Scan
M03761_2.00 NN 70-40% CisBP GCGATAAG 58.4% identity Open · Scan
M06893_2.00 NN 70-40% CisBP CAGATCGGATT 57.1% identity Open · Scan
MA0766.1 NN 70-40% JASPAR AGATAAGA 57.1% identity Open · Scan
MA0035.1 NN 70-40% JASPAR GGATGG 56.8% identity Open · Scan
MA0035.4 NN 70-40% JASPAR TTCTAATCTAT 56.8% identity Open · Scan
M00049_2.00 NN 70-40% CisBP TACTGATAAG 55.0% identity Open · Scan
M02017_2.00 NN 70-40% CisBP CAGATAAG 55.0% identity Open · Scan
M06897_2.00 NN 70-40% CisBP ATGATGATGATGATGATGATGATGATG 53.5% identity Open · Scan
M02019_2.00 NN 70-40% CisBP TTAGAGATCT 52.6% identity Open · Scan
M06886_2.00 NN 70-40% CisBP GATGATGATGATGATGATG 51.7% identity Open · Scan
M06885_2.00 NN 70-40% CisBP TCGATCGGATTAG 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfv_C_1 ModCRE Homology model ATGATATCAAA Region 15-63 · 1 3D model Open · Scan
TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfv_D_1 ModCRE Homology model CTAGATATCAAA Region 15-63 · 1 3D model Open · Scan
TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfx_A_1 ModCRE Homology model TTATAGATATTAG Region 15-63 · 1 3D model Open · Scan
TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfx_B_1 ModCRE Homology model CGAGATATATAG Region 15-63 · 1 3D model Open · Scan
TFS_tr_H0YAV4_H0YAV4_HUMAN:7:63_4hc7_A_1 ModCRE Homology model TTATAGATATGC Region 7-63 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 271 aa
7-63

Region 7-63 5 PWM

Residues
57 aa
Domains
PF00320 · GATA zinc finger
3D models
5 active PDBs · 4 summary rows
Templates
3DFV, 3DFX, 4HC7
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 4 summary rows
Region 7-635 models · 4 summary rows
Actions
Predicted = Low TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfv_C_1 3dfv 15-63 View model · PDB
Predicted = Low TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfv_D_1 3dfv 15-63 View model · PDB
Predicted = Low TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfx_A_1 3dfx 15-63 View model · PDB
Predicted = Low TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfx_B_1 3dfx 15-63 View model · PDB
Predicted = Low TFS_tr_H0YAV4_H0YAV4_HUMAN:7:63_4hc7_A_1 4hc7 7-63 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 3dfx 7:63 15 63 P:B · DNA:X,Y 63.3% / 75.5% 84 View · PDB TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfx_B_1
3 3dfx 7:63 15 63 P:A · DNA:X,Y 63.3% / 75.5% 84 View · PDB TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfx_A_1
4 3dfv 7:63 15 63 P:D · DNA:Y,Z 63.3% / 75.5% 87 View · PDB TFS_tr_H0YAV4_H0YAV4_HUMAN:15:63_3dfv_D_1
1 4hc7 7:63 7 63 P:A · DNA:W,X 62.3% / 72.1% 52 View · PDB TFS_tr_H0YAV4_H0YAV4_HUMAN:7:63_4hc7_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
21-54PF00320GATA zinc fingeroverlaps 7-63