ModCRE DB

Transcription factor

H0YCN3 - ZNF517

Zinc finger protein 517

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 459 aa

46 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)41
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 56.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.4% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 56.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 55.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.2% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 54.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 52.8% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.6% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 52.4% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 51.8% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.4% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.2% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.0% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.0% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 50.6% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 50.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 50.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 50.1% identity Open · Scan
M00224_2.00 NN 70-40% CisBP CCCGCCCC 50.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 50.0% identity Open · Scan
MA0516.1 NN 70-40% JASPAR GCCCCGCCCCCTCCC 50.0% identity Open · Scan
MA1653.1 NN 70-40% JASPAR CCCCCCTCCCCC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_H0YCN3_H0YCN3_HUMAN:361:409_1llm_D_1 ModCRE Homology model CTCGATCGGCGG Region 361-409 · 1 3D model Open · Scan
TFS_tr_H0YCN3_H0YCN3_HUMAN:139:414_5wjq_D_1 ModCRE Homology model GCGCCAGGCCCCGCTCCCACGTCCGGCC Region 139-414 · 1 3D model Open · Scan
TFS_tr_H0YCN3_H0YCN3_HUMAN:153:306_2i13_A_1 ModCRE Homology model CTCAGTTAGGGTAGCTTGAAT Region 153-306 · 1 3D model Open · Scan
TFS_tr_H0YCN3_H0YCN3_HUMAN:171:441_5v3j_E_1 ModCRE Homology model CCCCCCCCCGGGGGTCCCCCCCCCAA Region 171-441 · 1 3D model Open · Scan
TFS_tr_H0YCN3_H0YCN3_HUMAN:171:441_5v3m_C_1 ModCRE Homology model CGCCCCCCACGGACGTCCCCCCCCGG Region 171-441 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 459 aa
139-441

Region 139-441 5 PWM

Residues
303 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 139-4416 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_H0YCN3_H0YCN3_HUMAN:361:409_1llm_D_1 1llm 361-409 View model · PDB
Predicted = Low TFS_tr_H0YCN3_H0YCN3_HUMAN:139:414_5wjq_D_1 5wjq 139-414 View model · PDB
Predicted = Low TFS_tr_H0YCN3_H0YCN3_HUMAN:148:437_7w1m_H_1 7w1m 148-437 View model · PDB
Predicted = Low TFS_tr_H0YCN3_H0YCN3_HUMAN:153:306_2i13_A_1 2i13 153-306 View model · PDB
Predicted = Low TFS_tr_H0YCN3_H0YCN3_HUMAN:171:441_5v3j_E_1 5v3j 171-441 View model · PDB
Predicted = Low TFS_tr_H0YCN3_H0YCN3_HUMAN:171:441_5v3m_C_1 5v3m 171-441 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 139:450 153 306 P:A · DNA:C,D 51.3% / 64.3% 100 View · PDB TFS_tr_H0YCN3_H0YCN3_HUMAN:153:306_2i13_A_1
1 1llm 139:450 361,361 409,409 P:C,D · DNA:A,B 49.0% / 59.2% 56,57 View · PDB DIMER_tr_H0YCN3_H0YCN3_HUMAN:361:409_1llm_D_1
1 5wjq 139:450 139 414 P:D · DNA:A,B 48.9% / 60.3% 97 View · PDB TFS_tr_H0YCN3_H0YCN3_HUMAN:139:414_5wjq_D_1
2 5v3m 139:450 171 441 P:C · DNA:A,B 46.7% / 59.8% 97 View · PDB TFS_tr_H0YCN3_H0YCN3_HUMAN:171:441_5v3m_C_1
3 5v3j 139:450 171 441 P:E · DNA:A,B 46.7% / 59.8% 97 View · PDB TFS_tr_H0YCN3_H0YCN3_HUMAN:171:441_5v3j_E_1
5 7w1m 139:450 148 437 P:H · DNA:F,G 32.2% / 50.3% 90 View · PDB TFS_tr_H0YCN3_H0YCN3_HUMAN:148:437_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
148-166PF00096Zinc finger, C2H2 typeoverlaps 139-441
172-194PF00096Zinc finger, C2H2 typeoverlaps 139-441
200-222PF00096Zinc finger, C2H2 typeoverlaps 139-441
228-250PF00096Zinc finger, C2H2 typeoverlaps 139-441
256-278PF00096Zinc finger, C2H2 typeoverlaps 139-441
284-306PF00096Zinc finger, C2H2 typeoverlaps 139-441
335-357PF00096Zinc finger, C2H2 typeoverlaps 139-441
363-385PF00096Zinc finger, C2H2 typeoverlaps 139-441
391-413PF00096Zinc finger, C2H2 typeoverlaps 139-441
419-441PF00096Zinc finger, C2H2 typeoverlaps 139-441