ModCRE DB

Transcription factor

H0YFS7 - SALL2

Sal-like protein 2 (Zinc finger protein Spalt-2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 902 aa

26 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M08979_2.00 NN 70-40% CisBP CCCACCCTCC 68.4% identity Open · Scan
M00641_2.00 NN 70-40% CisBP ATTGACCACT 60.0% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 56.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.7% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 54.7% identity Open · Scan
M01022_2.00 NN 70-40% CisBP GGACCACCCAC 53.8% identity Open · Scan
M01024_2.00 NN 70-40% CisBP GGACCACCCA 53.8% identity Open · Scan
MA0734.1 NN 70-40% JASPAR GCGACCACACTG 53.8% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.8% identity Open · Scan
M00954_2.00 NN 70-40% CisBP CTACCCTA 52.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.2% identity Open · Scan
M00608_2.00 NN 70-40% CisBP CCTGTTG 51.0% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 50.9% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 50.9% identity Open · Scan
M10203_2.00 NN 70-40% CisBP CCCCAAACCACCCC 50.8% identity Open · Scan
MA0073.1 NN 70-40% JASPAR CCCCAAACCACCCCCCCCCA 50.8% identity Open · Scan
M00765_2.00 NN 70-40% CisBP CCCGCCCCC 50.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.0% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 50.0% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.0% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_H0YFS7_H0YFS7_HUMAN:233:282_3uk3_C_1 ModCRE Homology model GATGGGAATGT Region 233-282 · 1 3D model Open · Scan
TFS_tr_H0YFS7_H0YFS7_HUMAN:233:282_4is1_C_1 ModCRE Homology model AATCTGAATGT Region 233-282 · 1 3D model Open · Scan
TFS_tr_H0YFS7_H0YFS7_HUMAN:233:284_4is1_D_1 ModCRE Homology model TGTGTCCACC Region 233-284 · 1 3D model Open · Scan
TFS_tr_H0YFS7_H0YFS7_HUMAN:551:574_1f2i_G_1 ModCRE Homology model CGGGCGTCCTG Region 551-574 · 1 3D model Open · Scan
TFS_tr_H0YFS7_H0YFS7_HUMAN:551:574_1f2i_H_1 ModCRE Homology model TTAAAGTCTCG Region 551-574 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 902 aa
231-289
489-574

Region 231-289 3 PWM

Residues
59 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 4 summary rows
Templates
1LLM, 3UK3, 4IS1, 8A4I, 8CUC, 8E3E
Sources
Predicted = Low
Scan this region Show models

Region 489-574 2 PWM

Residues
86 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
4 active PDBs · 2 summary rows
Templates
1F2I, 6E93, 6E94
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 231-2897 models · 4 summary rows
Actions
Predicted = Low DIMER_tr_H0YFS7_H0YFS7_HUMAN:233:278_1llm_D_1 1llm 233-278 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:231:282_8a4i_I_1 8a4i 231-282 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:231:282_8cuc_F_1 8cuc 231-282 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:233:282_3uk3_C_1 3uk3 233-282 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:233:282_4is1_C_1 4is1 233-282 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:233:284_4is1_D_1 4is1 233-284 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:233:289_8e3e_A_1 8e3e 233-289 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8cuc 229:301 231 282 P:F · DNA:A,B 61.5% / 75.0% 96 View · PDB TFS_tr_H0YFS7_H0YFS7_HUMAN:231:282_8cuc_F_1
2 8a4i 229:301 231 282 P:I · DNA:A,B 61.5% / 75.0% 96 View · PDB TFS_tr_H0YFS7_H0YFS7_HUMAN:231:282_8a4i_I_1
5 8e3e 229:301 233 289 P:A · DNA:X,Y 45.6% / 63.2% 51 View · PDB TFS_tr_H0YFS7_H0YFS7_HUMAN:233:289_8e3e_A_1
1 1llm 229:301 233,233 278,278 P:C,D · DNA:A,B 39.1% / 58.7% 52,54 View · PDB DIMER_tr_H0YFS7_H0YFS7_HUMAN:233:278_1llm_D_1
Region 489-5744 models · 2 summary rows
Actions
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:489:574_6e93_A_1 6e93 489-574 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:489:574_6e94_A_1 6e94 489-574 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:551:574_1f2i_G_1 1f2i 551-574 View model · PDB
Predicted = Low TFS_tr_H0YFS7_H0YFS7_HUMAN:551:574_1f2i_H_1 1f2i 551-574 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 6e93 229:301 489 574 P:A · DNA:C,D 38.4% / 52.3% 73 View · PDB TFS_tr_H0YFS7_H0YFS7_HUMAN:489:574_6e93_A_1
4 6e94 229:301 489 574 P:A · DNA:C,D 38.4% / 52.3% 73 View · PDB TFS_tr_H0YFS7_H0YFS7_HUMAN:489:574_6e94_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
260-282PF00096Zinc finger, C2H2 typeoverlaps 231-289
518-540PF00096Zinc finger, C2H2 typeoverlaps 489-574
551-572PF00096Zinc finger, C2H2 typeoverlaps 489-574
772-795PF13912C2H2-type zinc fingerNo overlap with loaded model regions