ModCRE DB

Transcription factor

H0YKM5 - HMG20A

High mobility group protein 20A (HMG box-containing protein 20A)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 162 aa

6 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M02487_2.00 NN 70-40% CisBP TTATTATATAT 63.5% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_H0YKM5_H0YKM5_HUMAN:100:154_3tmm_A_1 ModCRE Homology model TCCACACCAAACAAGGCC Region 100-154 · 1 3D model Open · Scan
TFS_tr_H0YKM5_H0YKM5_HUMAN:100:154_6hc3_A_1 ModCRE Homology model GAACATTACCTT Region 100-154 · 1 3D model Open · Scan
TFS_tr_H0YKM5_H0YKM5_HUMAN:91:162_1j5n_A_1 ModCRE Homology model AAAAATTTTGTTCAC Region 91-162 · 1 3D model Open · Scan
TFS_tr_H0YKM5_H0YKM5_HUMAN:94:162_2gzk_A_1 ModCRE Homology model GGATCTCCCCTATT Region 94-162 · 1 3D model Open · Scan
TFS_tr_H0YKM5_H0YKM5_HUMAN:94:162_6cij_N_1 ModCRE Homology model ATTAATAAGTGCCAAGT Region 94-162 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 162 aa
91-162

Region 91-162 5 PWM

Residues
72 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
5 active PDBs · 5 summary rows
Templates
1J5N, 2GZK, 3TMM, 6CIJ, 6HC3
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 91-1625 models · 5 summary rows
Actions
Predicted = Low TFS_tr_H0YKM5_H0YKM5_HUMAN:100:154_3tmm_A_1 3tmm 100-154 View model · PDB
Predicted = Low TFS_tr_H0YKM5_H0YKM5_HUMAN:100:154_6hc3_A_1 6hc3 100-154 View model · PDB
Predicted = Low TFS_tr_H0YKM5_H0YKM5_HUMAN:91:162_1j5n_A_1 1j5n 91-162 View model · PDB
Predicted = Low TFS_tr_H0YKM5_H0YKM5_HUMAN:94:162_2gzk_A_1 2gzk 94-162 View model · PDB
Predicted = Low TFS_tr_H0YKM5_H0YKM5_HUMAN:94:162_6cij_N_1 6cij 94-162 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1j5n 91:162 91 162 P:A · DNA:B,C 38.9% / 63.9% 77 View · PDB TFS_tr_H0YKM5_H0YKM5_HUMAN:91:162_1j5n_A_1
4 6hc3 91:162 100 154 P:A · DNA:B,C 30.9% / 56.4% 28 View · PDB TFS_tr_H0YKM5_H0YKM5_HUMAN:100:154_6hc3_A_1
5 3tmm 91:162 100 154 P:A · DNA:B,C 30.9% / 56.4% 28 View · PDB TFS_tr_H0YKM5_H0YKM5_HUMAN:100:154_3tmm_A_1
3 2gzk 91:162 94 162 P:A · DNA:B,C 30.4% / 56.5% 43 View · PDB TFS_tr_H0YKM5_H0YKM5_HUMAN:94:162_2gzk_A_1
2 6cij 91:162 94 162 P:N · DNA:G,M 30.4% / 53.6% 50 View · PDB TFS_tr_H0YKM5_H0YKM5_HUMAN:94:162_6cij_N_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
103-162PF00505HMG (high mobility group) boxoverlaps 91-162