ModCRE DB

Transcription factor

H0YLA6 - ZNF280D

Zinc finger protein 280D

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 535 aa

7 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M08332_2.00 NN 70-40% CisBP TCTCTCCAGTGTGAATTCTCTGAT 52.8% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_H0YLA6_H0YLA6_HUMAN:390:441_1llm_C_1 ModCRE Homology model GCCCCGCGGGGT Region 390-441 · 1 3D model Open · Scan
TFS_tr_H0YLA6_H0YLA6_HUMAN:355:469_5ei9_E_1 ModCRE Homology model GCGGCTTTAGGCAGGCC Region 355-469 · 1 3D model Open · Scan
TFS_tr_H0YLA6_H0YLA6_HUMAN:360:497_5v3j_E_1 ModCRE Homology model TTCCAGTCGATCTGTC Region 360-497 · 1 3D model Open · Scan
TFS_tr_H0YLA6_H0YLA6_HUMAN:360:497_5v3m_C_1 ModCRE Homology model TTCCTTTCTCTCGAAGA Region 360-497 · 1 3D model Open · Scan
TFS_tr_H0YLA6_H0YLA6_HUMAN:360:497_5wjq_D_1 ModCRE Homology model TCCCCTTGTATCGATCA Region 360-497 · 1 3D model Open · Scan
TFS_tr_H0YLA6_H0YLA6_HUMAN:360:498_5t0u_A_1 ModCRE Homology model CGCTAGCTGGAAAGTATATTTAC Region 360-498 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 535 aa
355-499

Region 355-499 6 PWM

Residues
145 aa
Domains
No overlapping PFAM annotation recorded
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 5EI9, 5T0U, 5V3J, 5V3M, 5WJQ, 6ML2, 6ML4, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 355-49911 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_H0YLA6_H0YLA6_HUMAN:390:441_1llm_C_1 1llm 390-441 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:355:469_5ei9_E_1 5ei9 355-469 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml2_A_1 6ml2 359-499 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml4_A_1 6ml4 359-499 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml5_A_1 6ml5 359-499 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml6_A_1 6ml6 359-499 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml7_A_1 6ml7 359-499 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:360:497_5v3j_E_1 5v3j 360-497 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:360:497_5v3m_C_1 5v3m 360-497 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:360:497_5wjq_D_1 5wjq 360-497 View model · PDB
Predicted = Low TFS_tr_H0YLA6_H0YLA6_HUMAN:360:498_5t0u_A_1 5t0u 360-498 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6ml5 347:499 359 499 P:A · DNA:E,F 27.7% / 40.4% 95 View · PDB TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml5_A_1
2 6ml7 347:499 359 499 P:A · DNA:E,F 27.7% / 40.4% 95 View · PDB TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml7_A_1
3 6ml6 347:499 359 499 P:A · DNA:E,F 27.7% / 40.4% 95 View · PDB TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml6_A_1
4 6ml4 347:499 359 499 P:A · DNA:E,F 27.7% / 40.4% 95 View · PDB TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml4_A_1
5 6ml2 347:499 359 499 P:A · DNA:E,F 27.0% / 39.7% 96 View · PDB TFS_tr_H0YLA6_H0YLA6_HUMAN:359:499_6ml2_A_1
1 1llm 347:499 390,390 441,441 P:C,D · DNA:A,B 25.0% / 46.2% 57,58 View · PDB DIMER_tr_H0YLA6_H0YLA6_HUMAN:390:441_1llm_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
45-229PF13836Domain of unknown function (DUF4195)No overlap with loaded model regions