Region 2-28 3 PWM
- Residues
- 27 aa
- Domains
- No overlapping PFAM annotation recorded
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 1J5N, 3F27, 6L6Y
- Sources
- Predicted = Low
Transcription factor
H0YMS9 - HMG20A
High mobility group 20A
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 29 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M02487_2.00 | NN 70-40% | CisBP | TTATTATATAT | 68.9% identity | Open · Scan |
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_H0YMS9_H0YMS9_HUMAN:2:28_1j5n_A_1 | ModCRE | Homology model | GAACTGTCAGG | Region 2-28 · 1 3D model | Open · Scan | |
| TFS_tr_H0YMS9_H0YMS9_HUMAN:3:28_3f27_D_1 | ModCRE | Homology model | CTAAACTTTTTGTA | Region 3-28 · 1 3D model | Open · Scan | |
| TFS_tr_H0YMS9_H0YMS9_HUMAN:3:28_6l6y_D_1 | ModCRE | Homology model | CTCCCCAAGTTTGG | Region 3-28 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
29 aa
2-28
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
3 active PDB models
3 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 2-283 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_H0YMS9_H0YMS9_HUMAN:2:28_1j5n_A_1 | 1j5n | 2-28 | View model · PDB |
| Predicted = Low | TFS_tr_H0YMS9_H0YMS9_HUMAN:3:28_3f27_D_1 | 3f27 | 3-28 | View model · PDB |
| Predicted = Low | TFS_tr_H0YMS9_H0YMS9_HUMAN:3:28_6l6y_D_1 | 6l6y | 3-28 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1j5n | 2:28 | 2 | 28 | P:A · DNA:B,C | 33.3% / 70.4% | 29 | View · PDB TFS_tr_H0YMS9_H0YMS9_HUMAN:2:28_1j5n_A_1 |
| 2 | 6l6y | 2:28 | 3 | 28 | P:D · DNA:A,B | 30.8% / 65.4% | 32 | View · PDB TFS_tr_H0YMS9_H0YMS9_HUMAN:3:28_6l6y_D_1 |
| 3 | 3f27 | 2:28 | 3 | 28 | P:D · DNA:A,B | 30.8% / 65.4% | 35 | View · PDB TFS_tr_H0YMS9_H0YMS9_HUMAN:3:28_3f27_D_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.