Region 91-156 1 PWM
- Residues
- 66 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 1J5N, 3TMM, 6CIJ, 6HC3, 7LBX
- Sources
- Predicted = Low
Transcription factor
H0YNS8 - HMG20A
High mobility group protein 20A (HMG box-containing protein 20A)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 156 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M02487_2.00 | NN 70-40% | CisBP | TTATTATATAT | 66.2% identity | Open · Scan |
ModCRE1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_H0YNS8_H0YNS8_HUMAN:100:154_7lbx_B_1 | ModCRE | Homology model | TAATTTGTTTTTCA | Region 100-154 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
156 aa
91-156
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 91-1565 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_H0YNS8_H0YNS8_HUMAN:100:154_3tmm_A_1 | 3tmm | 100-154 | View model · PDB |
| Predicted = Low | TFS_tr_H0YNS8_H0YNS8_HUMAN:100:154_6hc3_A_1 | 6hc3 | 100-154 | View model · PDB |
| Predicted = Low | TFS_tr_H0YNS8_H0YNS8_HUMAN:100:154_7lbx_B_1 | 7lbx | 100-154 | View model · PDB |
| Predicted = Low | TFS_tr_H0YNS8_H0YNS8_HUMAN:91:152_1j5n_A_1 | 1j5n | 91-152 | View model · PDB |
| Predicted = Low | TFS_tr_H0YNS8_H0YNS8_HUMAN:94:156_6cij_N_1 | 6cij | 94-156 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1j5n | 91:156 | 91 | 152 | P:A · DNA:B,C | 38.7% / 64.5% | 66 | View · PDB TFS_tr_H0YNS8_H0YNS8_HUMAN:91:152_1j5n_A_1 |
| 2 | 6hc3 | 91:156 | 100 | 154 | P:A · DNA:B,C | 30.9% / 56.4% | 28 | View · PDB TFS_tr_H0YNS8_H0YNS8_HUMAN:100:154_6hc3_A_1 |
| 3 | 7lbx | 91:156 | 100 | 154 | P:B · DNA:C,D,E,F | 30.9% / 56.4% | 29 | View · PDB TFS_tr_H0YNS8_H0YNS8_HUMAN:100:154_7lbx_B_1 |
| 4 | 3tmm | 91:156 | 100 | 154 | P:A · DNA:B,C | 30.9% / 56.4% | 28 | View · PDB TFS_tr_H0YNS8_H0YNS8_HUMAN:100:154_3tmm_A_1 |
| 5 | 6cij | 91:156 | 94 | 156 | P:N · DNA:G,M | 30.2% / 52.4% | 45 | View · PDB TFS_tr_H0YNS8_H0YNS8_HUMAN:94:156_6cij_N_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 103-156 | PF00505 | HMG (high mobility group) box | overlaps 91-156 |