ModCRE DB

Transcription factor

H3BNI0 - ZNF19

Zinc finger protein 19

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 416 aa

106 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)100
MotifPredictionSourceDNA bindingSupportLogoActions
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 67.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 60.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 60.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.3% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 58.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.6% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 57.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.9% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 56.7% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 56.4% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.2% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 55.9% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 55.9% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 55.7% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 55.7% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 55.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 55.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 55.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 55.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 55.2% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 54.9% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 54.7% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.2% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 54.2% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 54.1% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 54.1% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 54.1% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 54.1% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 54.1% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 54.0% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 54.0% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 53.9% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 53.8% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 53.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.7% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 53.7% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 53.6% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 53.5% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 53.5% identity Open · Scan
M08914_2.00 NN 70-40% CisBP ATTTAGTCCATTTACATTTAATGT 53.4% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 53.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.0% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 52.9% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 52.7% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 52.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.7% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 52.6% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 52.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 52.5% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.4% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 52.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.4% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 52.2% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 52.2% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 52.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 52.1% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.1% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 52.0% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 52.0% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 52.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.9% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 51.7% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 51.7% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 51.5% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 51.5% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.4% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 51.3% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 51.3% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 51.3% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.2% identity Open · Scan
M00774_2.00 NN 70-40% CisBP TTAGTATACACAAGT 51.2% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 51.2% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 51.1% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 51.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 51.0% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 51.0% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 51.0% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 50.7% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 50.6% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.5% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.5% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 50.5% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 50.5% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.2% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.1% identity Open · Scan
MA1155.1 NN 70-40% JASPAR TGCACACACTGAAAA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_H3BNI0_H3BNI0_HUMAN:257:308_1llm_D_1 ModCRE Homology model TCCGCGCGCGGA Region 257-308 · 1 3D model Open · Scan
TFS_tr_H3BNI0_H3BNI0_HUMAN:115:394_5wjq_D_1 ModCRE Homology model AAAAAAAGGCCCCGGGGTTCCCGCACGG Region 115-394 · 1 3D model Open · Scan
TFS_tr_H3BNI0_H3BNI0_HUMAN:118:394_5v3j_E_1 ModCRE Homology model TGGAATCGGGGGGGGGGGGGGGGTCC Region 118-394 · 1 3D model Open · Scan
TFS_tr_H3BNI0_H3BNI0_HUMAN:118:394_5v3m_C_1 ModCRE Homology model TCCAACCCGGGGGGGGGGGGGTTGCG Region 118-394 · 1 3D model Open · Scan
TFS_tr_H3BNI0_H3BNI0_HUMAN:128:281_2i13_A_1 ModCRE Homology model ACTTGCCTACTACTACTTTCA Region 128-281 · 1 3D model Open · Scan
TFS_tr_H3BNI0_H3BNI0_HUMAN:144:254_5ei9_E_1 ModCRE Homology model GCCCCGGAGGGGGGCCCA Region 144-254 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 416 aa
115-394

Region 115-394 6 PWM

Residues
280 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 115-3946 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_H3BNI0_H3BNI0_HUMAN:257:308_1llm_D_1 1llm 257-308 View model · PDB
Predicted = Low TFS_tr_H3BNI0_H3BNI0_HUMAN:115:394_5wjq_D_1 5wjq 115-394 View model · PDB
Predicted = Low TFS_tr_H3BNI0_H3BNI0_HUMAN:118:394_5v3j_E_1 5v3j 118-394 View model · PDB
Predicted = Low TFS_tr_H3BNI0_H3BNI0_HUMAN:118:394_5v3m_C_1 5v3m 118-394 View model · PDB
Predicted = Low TFS_tr_H3BNI0_H3BNI0_HUMAN:128:281_2i13_A_1 2i13 128-281 View model · PDB
Predicted = Low TFS_tr_H3BNI0_H3BNI0_HUMAN:144:254_5ei9_E_1 5ei9 144-254 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 113:394 144 254 P:E · DNA:A,B 58.6% / 71.2% 100 View · PDB TFS_tr_H3BNI0_H3BNI0_HUMAN:144:254_5ei9_E_1
4 2i13 113:394 128 281 P:A · DNA:C,D 55.8% / 68.8% 100 View · PDB TFS_tr_H3BNI0_H3BNI0_HUMAN:128:281_2i13_A_1
1 5wjq 113:394 115 394 P:D · DNA:A,B 48.9% / 67.5% 99 View · PDB TFS_tr_H3BNI0_H3BNI0_HUMAN:115:394_5wjq_D_1
2 5v3m 113:394 118 394 P:C · DNA:A,B 46.6% / 66.4% 100 View · PDB TFS_tr_H3BNI0_H3BNI0_HUMAN:118:394_5v3m_C_1
3 5v3j 113:394 118 394 P:E · DNA:A,B 46.6% / 66.4% 100 View · PDB TFS_tr_H3BNI0_H3BNI0_HUMAN:118:394_5v3j_E_1
1 1llm 113:394 257,257 308,308 P:C,D · DNA:A,B 44.2% / 67.3% 59,61 View · PDB DIMER_tr_H3BNI0_H3BNI0_HUMAN:257:308_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
119-141PF00096Zinc finger, C2H2 typeoverlaps 115-394
147-169PF00096Zinc finger, C2H2 typeoverlaps 115-394
175-197PF00096Zinc finger, C2H2 typeoverlaps 115-394
203-225PF00096Zinc finger, C2H2 typeoverlaps 115-394
231-253PF00096Zinc finger, C2H2 typeoverlaps 115-394
259-281PF00096Zinc finger, C2H2 typeoverlaps 115-394
287-309PF00096Zinc finger, C2H2 typeoverlaps 115-394
315-337PF00096Zinc finger, C2H2 typeoverlaps 115-394
343-365PF00096Zinc finger, C2H2 typeoverlaps 115-394