ModCRE DB

Transcription factor

H3BUJ7 - E4F1

Transcription factor E4F1 (EC 2.3.2.27) (E4F transcription factor 1) (Putative E3 ubiquitin-protein ligase E4F1) (RING-type E3 ubiquitin transferase E4F1) (Transcription factor E4F) (p120E4F)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 654 aa

13 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M08979_2.00 NN 70-40% CisBP CCCACCCTCC 54.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 51.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 50.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 50.0% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:433:599_5wjq_D_1 ModCRE Homology model CGGTGTGTAGAGTCAGTCC Region 433-599 · 1 3D model Open · Scan
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:434:597_8sst_A_1 ModCRE Homology model CCGCGCGGGCAAAGGTGTTTTGT Region 434-597 · 1 3D model Open · Scan
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:435:593_5v3j_E_1 ModCRE Homology model AACAAAATTTTTGAT Region 435-593 · 1 3D model Open · Scan
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:435:593_5v3m_C_1 ModCRE Homology model CATAAAATTTTCGATA Region 435-593 · 1 3D model Open · Scan
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:444:596_2i13_A_1 ModCRE Homology model TCCTGGTGGGGCTAAGCTAAC Region 444-596 · 1 3D model Open · Scan
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:488:596_5egb_A_1 ModCRE Homology model CCCCGTCCTGGGCCCGTG Region 488-596 · 1 3D model Open · Scan
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:488:596_5ei9_E_1 ModCRE Homology model CCGGGCCCGGGGGGGAC Region 488-596 · 1 3D model Open · Scan
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:491:570_2kmk_A_1 ModCRE Homology model CTCCCGGTGTACTGGT Region 491-570 · 1 3D model Open · Scan
TFS_tr_H3BUJ7_H3BUJ7_HUMAN:516:595_1g2f_C_1 ModCRE Homology model CCCCGGGGGGCTTCG Region 516-595 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 654 aa
433-599

Region 433-599 9 PWM

Residues
167 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
10 active PDBs · 6 summary rows
Templates
1G2F, 1LLM, 2I13, 2KMK, 5EGB, 5EI9, 5V3J, 5V3M, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 6 summary rows
Region 433-59910 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_H3BUJ7_H3BUJ7_HUMAN:545:593_1llm_D_1 1llm 545-593 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:433:599_5wjq_D_1 5wjq 433-599 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:434:597_8sst_A_1 8sst 434-597 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:435:593_5v3j_E_1 5v3j 435-593 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:435:593_5v3m_C_1 5v3m 435-593 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:444:596_2i13_A_1 2i13 444-596 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:488:596_5egb_A_1 5egb 488-596 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:488:596_5ei9_E_1 5ei9 488-596 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:491:570_2kmk_A_1 2kmk 491-570 View model · PDB
Predicted = Low TFS_tr_H3BUJ7_H3BUJ7_HUMAN:516:595_1g2f_C_1 1g2f 516-595 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 433:600 545,545 593,593 P:C,D · DNA:A,B 49.0% / 53.1% 56,57 View · PDB DIMER_tr_H3BUJ7_H3BUJ7_HUMAN:545:593_1llm_D_1
1 2i13 433:600 444 596 P:A · DNA:C,D 40.5% / 58.8% 99 View · PDB TFS_tr_H3BUJ7_H3BUJ7_HUMAN:444:596_2i13_A_1
2 5v3m 433:600 435 593 P:C · DNA:A,B 37.1% / 54.7% 57 View · PDB TFS_tr_H3BUJ7_H3BUJ7_HUMAN:435:593_5v3m_C_1
3 5v3j 433:600 435 593 P:E · DNA:A,B 37.1% / 54.7% 57 View · PDB TFS_tr_H3BUJ7_H3BUJ7_HUMAN:435:593_5v3j_E_1
4 5wjq 433:600 433 599 P:D · DNA:A,B 37.1% / 53.3% 59 View · PDB TFS_tr_H3BUJ7_H3BUJ7_HUMAN:433:599_5wjq_D_1
5 8sst 433:600 434 597 P:A · DNA:B,C 36.4% / 50.3% 83 View · PDB TFS_tr_H3BUJ7_H3BUJ7_HUMAN:434:597_8sst_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
192-214PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
220-242PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
248-268PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
435-457PF00096Zinc finger, C2H2 typeoverlaps 433-599
463-485PF00096Zinc finger, C2H2 typeoverlaps 433-599
519-541PF00096Zinc finger, C2H2 typeoverlaps 433-599
575-596PF00096Zinc finger, C2H2 typeoverlaps 433-599