ModCRE DB

Transcription factor

H7BYN3 - TFAM

Transcription factor A, mitochondrial

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 219 aa

7 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_H7BYN3_H7BYN3_HUMAN:25:183_3tmm_A_1 ModCRE Homology model CCCTTTAAGTGTGGGCCCCCAACAACCG Region 25-183 · 1 3D model Open · Scan
TFS_tr_H7BYN3_H7BYN3_HUMAN:25:183_6hc3_A_1 ModCRE Homology model GTCGGTGGAATGTTTTTGTTA Region 25-183 · 1 3D model Open · Scan
TFS_tr_H7BYN3_H7BYN3_HUMAN:26:183_3tq6_A_1 ModCRE Homology model CGTTGTTGGGGGGTGACTGTTA Region 26-183 · 1 3D model Open · Scan
TFS_tr_H7BYN3_H7BYN3_HUMAN:26:183_6hb4_A_1 ModCRE Homology model CGGTCATTGGAAGTCCGCACAG Region 26-183 · 1 3D model Open · Scan
TFS_tr_H7BYN3_H7BYN3_HUMAN:33:100_1gt0_D_1 ModCRE Homology model CAAATGAGGGGTC Region 33-100 · 1 3D model Open · Scan
TFS_tr_H7BYN3_H7BYN3_HUMAN:33:100_1o4x_B_1 ModCRE Homology model GCTCGACGCCGGTTG Region 33-100 · 1 3D model Open · Scan
TFS_tr_H7BYN3_H7BYN3_HUMAN:33:100_6ht5_D_1 ModCRE Homology model TCCCGGCGGCGGGTC Region 33-100 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 219 aa
25-183

Region 25-183 7 PWM

Residues
159 aa
Domains
PF00505 · HMG (high mobility group) box PF09011 · HMG-box domain
3D models
8 active PDBs · 5 summary rows
Templates
1GT0, 1O4X, 3TMM, 3TQ6, 6HB4, 6HC3, 6HT5, 7LBW
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 5 summary rows
Region 25-1838 models · 5 summary rows
Actions
Predicted = Low TFS_tr_H7BYN3_H7BYN3_HUMAN:25:183_3tmm_A_1 3tmm 25-183 View model · PDB
Predicted = Low TFS_tr_H7BYN3_H7BYN3_HUMAN:25:183_6hc3_A_1 6hc3 25-183 View model · PDB
Predicted = Low TFS_tr_H7BYN3_H7BYN3_HUMAN:26:183_3tq6_A_1 3tq6 26-183 View model · PDB
Predicted = Low TFS_tr_H7BYN3_H7BYN3_HUMAN:26:183_6hb4_A_1 6hb4 26-183 View model · PDB
Predicted = Low TFS_tr_H7BYN3_H7BYN3_HUMAN:26:183_7lbw_A_1 7lbw 26-183 View model · PDB
Predicted = Low TFS_tr_H7BYN3_H7BYN3_HUMAN:33:100_1gt0_D_1 1gt0 33-100 View model · PDB
Predicted = Low TFS_tr_H7BYN3_H7BYN3_HUMAN:33:100_1o4x_B_1 1o4x 33-100 View model · PDB
Predicted = Low TFS_tr_H7BYN3_H7BYN3_HUMAN:33:100_6ht5_D_1 6ht5 33-100 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 3tmm 25:183 25 183 P:A · DNA:B,C 98.7% / 99.4% 81 View · PDB TFS_tr_H7BYN3_H7BYN3_HUMAN:25:183_3tmm_A_1
2 6hc3 25:183 25 183 P:A · DNA:B,C 98.7% / 99.4% 82 View · PDB TFS_tr_H7BYN3_H7BYN3_HUMAN:25:183_6hc3_A_1
3 3tq6 25:183 26 183 P:A · DNA:C,D 98.7% / 99.4% 81 View · PDB TFS_tr_H7BYN3_H7BYN3_HUMAN:26:183_3tq6_A_1
4 6hb4 25:183 26 183 P:A · DNA:B,C 98.7% / 99.4% 80 View · PDB TFS_tr_H7BYN3_H7BYN3_HUMAN:26:183_6hb4_A_1
5 7lbw 25:183 26 183 P:A · DNA:C,D,E,F 98.7% / 99.4% 81 View · PDB TFS_tr_H7BYN3_H7BYN3_HUMAN:26:183_7lbw_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
32-100PF00505HMG (high mobility group) boxoverlaps 25-183
136-180PF09011HMG-box domainoverlaps 25-183