ModCRE DB

Transcription factor

H7C0B1 - TBR1

T-box brain transcription factor 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 232 aa

30 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0802.1 NN 70+% JASPAR AGGTGTGAAA 86.8% identity Open · Scan
Nearest Neighbor (70% - 40%)29
MotifPredictionSourceDNA bindingSupportLogoActions
M03563_2.00 NN 70-40% CisBP AAGGTGTGAAAAT 61.4% identity Open · Scan
MA0800.1 NN 70-40% JASPAR AAGGTGTGAAAAT 60.5% identity Open · Scan
MA0690.1 NN 70-40% JASPAR AAGGTGTGAA 59.4% identity Open · Scan
M00734_2.00 NN 70-40% CisBP GAGGTGTGAA 59.2% identity Open · Scan
MA0801.1 NN 70-40% JASPAR AGGTGTGA 57.6% identity Open · Scan
M06453_2.00 NN 70-40% CisBP AAGTGCGA 56.0% identity Open · Scan
M01030_2.00 NN 70-40% CisBP TTGACACCTC 55.8% identity Open · Scan
M03559_2.00 NN 70-40% CisBP AGGTGTGAAATTTCACACCT 55.5% identity Open · Scan
MA0806.1 NN 70-40% JASPAR AGGTGTGA 55.5% identity Open · Scan
M00833_2.00 NN 70-40% CisBP AGGTGTGA 55.3% identity Open · Scan
MA0807.1 NN 70-40% JASPAR AGGTGTGA 55.3% identity Open · Scan
M03993_2.00 NN 70-40% CisBP GAGGTGTGAA 55.0% identity Open · Scan
M02498_2.00 NN 70-40% CisBP AGGTGTCA 54.2% identity Open · Scan
MA0804.1 NN 70-40% JASPAR TTTCACACCTAGGTGTGAAA 53.6% identity Open · Scan
M08044_2.00 NN 70-40% CisBP GCATTCTGGGAATTGTAGTTT 53.4% identity Open · Scan
MA0688.1 NN 70-40% JASPAR AAGGTGTGAAA 53.4% identity Open · Scan
MA1567.1 NN 70-40% JASPAR GAGGTGTGAA 53.4% identity Open · Scan
MA0009.1 NN 70-40% JASPAR CTAGGTGTGAA 53.1% identity Open · Scan
MA0009.2 NN 70-40% JASPAR TCACACCTAGGTGTGA 53.1% identity Open · Scan
M05798_2.00 NN 70-40% CisBP AAAGGTGTGAAA 52.9% identity Open · Scan
MA1565.1 NN 70-40% JASPAR GGAGGTGTGAAA 52.9% identity Open · Scan
M02495_2.00 NN 70-40% CisBP TTGACACCTC 52.7% identity Open · Scan
M02496_2.00 NN 70-40% CisBP AAGGTGTCAA 52.7% identity Open · Scan
M03994_2.00 NN 70-40% CisBP AAGGTGTGAA 52.3% identity Open · Scan
M01029_2.00 NN 70-40% CisBP AGGTGTGA 51.9% identity Open · Scan
M03554_2.00 NN 70-40% CisBP AGGTGTGAAATTCACACCT 51.5% identity Open · Scan
MA0803.1 NN 70-40% JASPAR AGGTGTGA 51.5% identity Open · Scan
M09650_2.00 NN 70-40% CisBP CCTGTCAACACC 50.4% identity Open · Scan
MA0689.1 NN 70-40% JASPAR TAGGTGTGAAG 50.4% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 232 aa
1-127

Region 1-127 0 PWM

Residues
127 aa
Domains
PF00907 · T-box
3D models
1 active PDB
Templates
4S0H
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-1271 model
Actions
Predicted = Low DIMER_H7C0B1:1:127_4s0h_E_1 4s0h 1-127 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-128PF00907T-boxoverlaps 1-127
173-228PF16176T-box transcription factor-associatedNo overlap with loaded model regions