Region 324-525 3 PWM
- Residues
- 202 aa
- Domains
- PF00628 · PHD-finger PF00385 · Chromo (CHRromatin Organisation MOdifier) domain
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 6RYR, 6RYU
- Sources
- Predicted = Low
Transcription factor
H7C2H0 - CHD3
Chromodomain helicase DNA binding protein 3
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 525 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M01103_2.00 | NN 70-40% | CisBP | AAAATATTAATT | 54.3% identity | Open · Scan | |
| M01677_2.00 | NN 70-40% | CisBP | ATAAAAAT | 54.3% identity | Open · Scan | |
| M01680_2.00 | NN 70-40% | CisBP | AAAATAAA | 54.3% identity | Open · Scan | |
| M01681_2.00 | NN 70-40% | CisBP | TAATATATTA | 54.3% identity | Open · Scan |
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryr_W_1 | ModCRE | Homology model | CAAAAAATT | Region 324-525 · 1 3D model | Open · Scan | |
| TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryu_V_1 | ModCRE | Homology model | TAATTTTTG | Region 324-525 · 1 3D model | Open · Scan | |
| TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryu_W_1 | ModCRE | Homology model | TAAAAAAAA | Region 324-525 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
525 aa
324-525
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
3 active PDB models
3 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 324-5253 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryr_W_1 | 6ryr | 324-525 | View model · PDB |
| Predicted = Low | TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryu_V_1 | 6ryu | 324-525 | View model · PDB |
| Predicted = Low | TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryu_W_1 | 6ryu | 324-525 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6ryu | 324:525 | 324 | 525 | P:W · DNA:I,J | 65.3% / 73.8% | 23 | View · PDB TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryu_W_1 |
| 2 | 6ryu | 324:525 | 324 | 525 | P:V · DNA:I,J | 65.3% / 73.8% | 23 | View · PDB TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryu_V_1 |
| 3 | 6ryr | 324:525 | 324 | 525 | P:W · DNA:I,J | 65.3% / 73.8% | 23 | View · PDB TFS_tr_H7C2H0_H7C2H0_HUMAN:324:525_6ryr_W_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 23-76 | PF08073 | CHDNT (NUC034) domain | No overlap with loaded model regions |
| 253-294 | PF00628 | PHD-finger | No overlap with loaded model regions |
| 330-371 | PF00628 | PHD-finger | overlaps 324-525 |
| 503-525 | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | overlaps 324-525 |