ModCRE DB

Transcription factor

H7C2N6 - ATF2

Activating transcription factor 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 265 aa

22 Generated PWM 14 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)8
MotifPredictionSourceDNA bindingSupportLogoActions
M04300_2.00 NN 70-40% CisBP GATGACATCATC 61.6% identity Open · Scan
MA1632.1 NN 70-40% JASPAR AAATGAGGTCATT 58.2% identity Open · Scan
MA1513.1 NN 70-40% JASPAR GCCCCGCCCCC 53.5% identity Open · Scan
M02866_2.00 NN 70-40% CisBP AATGACGTCACC 53.3% identity Open · Scan
MA0840.1 NN 70-40% JASPAR AATGACGTCACC 53.3% identity Open · Scan
M04252_2.00 NN 70-40% CisBP CGTTACGTCACG 51.3% identity Open · Scan
M09493_2.00 NN 70-40% CisBP CGATGACGTCAT 51.0% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 50.0% identity Open · Scan
ModCRE14
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_H7C2N6_H7C2N6_HUMAN:183:223_1dh3_C_1 ModCRE Homology model ACAACCTGACGTCAGCCTCC Region 183-223 · 1 3D model Open · Scan
DIMER_tr_H7C2N6_H7C2N6_HUMAN:183:223_5zko_C_1 ModCRE Homology model GGCGACTGACGTCACTGGGC Region 183-223 · 1 3D model Open · Scan
DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:230_2c9l_Z_1 ModCRE Homology model CCCGCTGTCTCAGTGGGG Region 190-230 · 1 3D model Open · Scan
DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:230_2c9n_Y_1 ModCRE Homology model TCTGAGTCAG Region 190-230 · 1 3D model Open · Scan
DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:236_1s9k_E_1 ModCRE Homology model GTTTTACACATATATTAA Region 190-236 · 1 3D model Open · Scan
DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:238_1jnm_A_1 ModCRE Homology model AAGTTATGACGTCAGTACTG Region 190-238 · 1 3D model Open · Scan
DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:238_5t01_B_1 ModCRE Homology model CACACTGAGTCATTAGTT Region 190-238 · 1 3D model Open · Scan
TFS_tr_H7C2N6_H7C2N6_HUMAN:12:38_2prt_A_1 ModCRE Homology model AG Region 12-38 · 1 3D model Open · Scan
TFS_tr_H7C2N6_H7C2N6_HUMAN:12:38_6b0o_A_1 ModCRE Homology model GCCCTAT Region 12-38 · 1 3D model Open · Scan
TFS_tr_H7C2N6_H7C2N6_HUMAN:182:233_2wt7_A_1 ModCRE Homology model TTATAGGACCTCATCC Region 182-233 · 1 3D model Open · Scan
TFS_tr_H7C2N6_H7C2N6_HUMAN:183:223_5zko_C_1 ModCRE Homology model AGCGACTGACGTCACTGGCG Region 183-223 · 1 3D model Open · Scan
TFS_tr_H7C2N6_H7C2N6_HUMAN:183:238_1t2k_D_1 ModCRE Homology model AACTGACAAAGTTGAG Region 183-238 · 1 3D model Open · Scan
TFS_tr_H7C2N6_H7C2N6_HUMAN:9:38_2jp9_A_1 ModCRE Homology model AATTTAAAAG Region 9-38 · 1 3D model Open · Scan
TFS_tr_H7C2N6_H7C2N6_HUMAN:9:38_2jpa_A_1 ModCRE Homology model AGAACTT Region 9-38 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 265 aa
9-38
182-238

Region 9-38 4 PWM

Residues
30 aa
Domains
No overlapping PFAM annotation recorded
3D models
4 active PDBs · 4 summary rows
Templates
2JP9, 2JPA, 2PRT, 6B0O
Sources
Predicted = Low
Scan this region Show models

Region 182-238 10 PWM

Residues
57 aa
Domains
PF00170 · bZIP transcription factor
3D models
10 active PDBs · 6 summary rows
Templates
1DH3, 1JNM, 1S9K, 1T2K, 2C9L, 2C9N, 2WT7, 5T01, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
14 active PDB models 10 summary rows
Region 9-384 models · 4 summary rows
Actions
Predicted = Low TFS_tr_H7C2N6_H7C2N6_HUMAN:12:38_2prt_A_1 2prt 12-38 View model · PDB
Predicted = Low TFS_tr_H7C2N6_H7C2N6_HUMAN:12:38_6b0o_A_1 6b0o 12-38 View model · PDB
Predicted = Low TFS_tr_H7C2N6_H7C2N6_HUMAN:9:38_2jp9_A_1 2jp9 9-38 View model · PDB
Predicted = Low TFS_tr_H7C2N6_H7C2N6_HUMAN:9:38_2jpa_A_1 2jpa 9-38 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2prt 182:238 12 38 P:A · DNA:B,C 44.4% / 63.0% 23 View · PDB TFS_tr_H7C2N6_H7C2N6_HUMAN:12:38_2prt_A_1
5 6b0o 182:238 12 38 P:A · DNA:B,C 44.4% / 63.0% 22 View · PDB TFS_tr_H7C2N6_H7C2N6_HUMAN:12:38_6b0o_A_1
2 2jpa 182:238 9 38 P:A · DNA:B,C 43.3% / 63.3% 25 View · PDB TFS_tr_H7C2N6_H7C2N6_HUMAN:9:38_2jpa_A_1
3 2jp9 182:238 9 38 P:A · DNA:B,C 43.3% / 63.3% 25 View · PDB TFS_tr_H7C2N6_H7C2N6_HUMAN:9:38_2jp9_A_1
Region 182-23810 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_H7C2N6_H7C2N6_HUMAN:183:223_1dh3_C_1 1dh3 183-223 View model · PDB
Predicted = Low DIMER_tr_H7C2N6_H7C2N6_HUMAN:183:223_5zko_C_1 5zko 183-223 View model · PDB
Predicted = Low DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:230_2c9l_Z_1 2c9l 190-230 View model · PDB
Predicted = Low DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:230_2c9n_Y_1 2c9n 190-230 View model · PDB
Predicted = Low DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:236_1s9k_E_1 1s9k 190-236 View model · PDB
Predicted = Low DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:238_1jnm_A_1 1jnm 190-238 View model · PDB
Predicted = Low DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:238_5t01_B_1 5t01 190-238 View model · PDB
Predicted = Low TFS_tr_H7C2N6_H7C2N6_HUMAN:182:233_2wt7_A_1 2wt7 182-233 View model · PDB
Predicted = Low TFS_tr_H7C2N6_H7C2N6_HUMAN:183:223_5zko_C_1 5zko 183-223 View model · PDB
Predicted = Low TFS_tr_H7C2N6_H7C2N6_HUMAN:183:238_1t2k_D_1 1t2k 183-238 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1t2k 182:238 183 238 P:D · DNA:E,F 75.0% / 83.9% 91 View · PDB TFS_tr_H7C2N6_H7C2N6_HUMAN:183:238_1t2k_D_1
2 1dh3 182:238 183,183 223,223 P:A,C · DNA:B,D 41.5% / 58.5% 74,74 View · PDB DIMER_tr_H7C2N6_H7C2N6_HUMAN:183:223_1dh3_C_1
3 2c9l 182:238 190,190 230,230 P:Y,Z · DNA:A,B 39.0% / 58.5% 65,66 View · PIR DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:230_2c9l_Z_1
1 1s9k 182:238 184,190 233,236 P:D,E · DNA:A,B 34.0% / 59.6% 94,90 View · PDB DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:236_1s9k_E_1
4 1jnm 182:238 190,190 238,238 P:A,B · DNA:C,D 30.6% / 57.1% 87,85 View · PIR DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:238_1jnm_A_1
5 5t01 182:238 190,190 238,238 P:A,B · DNA:C,D 30.6% / 57.1% 79,79 View · PDB DIMER_tr_H7C2N6_H7C2N6_HUMAN:190:238_5t01_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
183-224PF00170bZIP transcription factoroverlaps 182-238