Region 1107-1185 1 PWM
- Residues
- 79 aa
- Domains
- PF00505 · HMG (high mobility group) box
- 3D models
- 6 active PDBs · 5 summary rows
- Templates
- 1GT0, 1O4X, 2LEF, 6HT5, 6JRP, 7M5W
- Sources
- Predicted = Low
Transcription factor
I3L2J0 - CIC
Protein capicua homolog
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 2514 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M03975_2.00 | NN 70-40% | CisBP | TAACAATATCATTGTTA | 53.2% identity | Open · Scan |
ModCRE1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_I3L2J0_I3L2J0_HUMAN:1107:1178_1o4x_B_1 | ModCRE | Homology model | TTGCTTAATAGGGGCA | Region 1107-1178 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
2514 aa
1107-1185
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 1107-11856 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_I3L2J0_I3L2J0_HUMAN:1107:1178_1o4x_B_1 | 1o4x | 1107-1178 | View model · PDB |
| Predicted = Low | TFS_tr_I3L2J0_I3L2J0_HUMAN:1107:1178_6ht5_D_1 | 6ht5 | 1107-1178 | View model · PDB |
| Predicted = Low | TFS_tr_I3L2J0_I3L2J0_HUMAN:1107:1180_7m5w_A_1 | 7m5w | 1107-1180 | View model · PDB |
| Predicted = Low | TFS_tr_I3L2J0_I3L2J0_HUMAN:1107:1185_1gt0_D_1 | 1gt0 | 1107-1185 | View model · PDB |
| Predicted = Low | TFS_tr_I3L2J0_I3L2J0_HUMAN:1108:1176_2lef_A_1 | 2lef | 1108-1176 | View model · PDB |
| Predicted = Low | TFS_tr_I3L2J0_I3L2J0_HUMAN:1108:1181_6jrp_A_1 | 6jrp | 1108-1181 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6jrp | 1103:1185 | 1108 | 1181 | P:A · DNA:B,C | 100.0% / 100.0% | 100 | View · PDB TFS_tr_I3L2J0_I3L2J0_HUMAN:1108:1181_6jrp_A_1 |
| 2 | 7m5w | 1103:1185 | 1107 | 1180 | P:A · DNA:B,C | 100.0% / 100.0% | 53 | View · PDB TFS_tr_I3L2J0_I3L2J0_HUMAN:1107:1180_7m5w_A_1 |
| 5 | 6ht5 | 1103:1185 | 1107 | 1178 | P:D · DNA:A,B | 40.3% / 61.1% | 93 | View · PDB TFS_tr_I3L2J0_I3L2J0_HUMAN:1107:1178_6ht5_D_1 |
| 4 | 1gt0 | 1103:1185 | 1107 | 1185 | P:D · DNA:A,B | 38.0% / 59.5% | 100 | View · PDB TFS_tr_I3L2J0_I3L2J0_HUMAN:1107:1185_1gt0_D_1 |
| 3 | 2lef | 1103:1185 | 1108 | 1176 | P:A · DNA:B,C | 36.2% / 66.7% | 80 | View · PDB TFS_tr_I3L2J0_I3L2J0_HUMAN:1108:1176_2lef_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 251-347 | PF16090 | Protein capicua homolog-like domain | No overlap with loaded model regions |
| 1110-1177 | PF00505 | HMG (high mobility group) box | overlaps 1107-1185 |
| 2371-2425 | PF25981 | Protein capicua homolog-like, C-terminal tri-helical domain | No overlap with loaded model regions |