Region 513-620 3 PWM
- Residues
- 108 aa
- Domains
- PF01429 · Methyl-CpG binding domain
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 7FHJ, 7MWH, 7MWL
- Sources
- Predicted = Low
Transcription factor
J3KPG5 - BAZ2A
Bromodomain adjacent to zinc finger domain protein 2A (Transcription termination factor I-interacting protein 5)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1875 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_J3KPG5_J3KPG5_HUMAN:513:620_7mwl_A_1 | ModCRE | Homology model | GGGCCCAG | Region 513-620 · 1 3D model | Open · Scan | |
| TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7fhj_A_1 | ModCRE | Homology model | GGATCCCG | Region 514-619 · 1 3D model | Open · Scan | |
| TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7mwh_A_1 | ModCRE | Homology model | TAAATCCA | Region 514-619 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
1875 aa
513-620
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 513-6205 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_J3KPG5_J3KPG5_HUMAN:513:620_7mwl_A_1 | 7mwl | 513-620 | View model · PDB |
| Predicted = Low | TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7fhj_A_1 | 7fhj | 514-619 | View model · PDB |
| Predicted = Low | TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7fhj_B_1 | 7fhj | 514-619 | View model · PDB |
| Predicted = Low | TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7mwh_A_1 | 7mwh | 514-619 | View model · PDB |
| Predicted = Low | TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7mwh_B_1 | 7mwh | 514-619 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 7mwl | 513:620 | 513 | 620 | P:A · DNA:E,F | 100.0% / 100.0% | 100 | View · PDB TFS_tr_J3KPG5_J3KPG5_HUMAN:513:620_7mwl_A_1 |
| 2 | 7mwh | 513:620 | 514 | 619 | P:B · DNA:C,D | 100.0% / 100.0% | 100 | View · PDB TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7mwh_B_1 |
| 3 | 7mwh | 513:620 | 514 | 619 | P:A · DNA:C,D | 100.0% / 100.0% | 100 | View · PDB TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7mwh_A_1 |
| 4 | 7fhj | 513:620 | 514 | 619 | P:B · DNA:C,D | 100.0% / 100.0% | 100 | View · PDB TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7fhj_B_1 |
| 5 | 7fhj | 513:620 | 514 | 619 | P:A · DNA:C,D | 100.0% / 100.0% | 100 | View · PDB TFS_tr_J3KPG5_J3KPG5_HUMAN:514:619_7fhj_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 517-589 | PF01429 | Methyl-CpG binding domain | overlaps 513-620 |
| 820-880 | PF02791 | DDT domain | No overlap with loaded model regions |
| 922-963 | PF15612 | WSTF, HB1, Itc1p, MBD9 motif 1 | No overlap with loaded model regions |
| 1082-1442 | PF15613 | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | No overlap with loaded model regions |
| 1649-1693 | PF00628 | PHD-finger | No overlap with loaded model regions |
| 1772-1853 | PF00439 | Bromodomain | No overlap with loaded model regions |