ModCRE DB

Transcription factor

J3KQC8 - ZNF544

Zinc finger protein 544

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 687 aa

124 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)6
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70+% CisBP GCAGCCCA 72.9% identity Open · Scan
M00960_2.00 NN 70+% CisBP TGCATCCC 72.9% identity Open · Scan
M00943_2.00 NN 70+% CisBP CCCGCTGC 71.7% identity Open · Scan
M00944_2.00 NN 70+% CisBP TCGCTATAA 71.7% identity Open · Scan
M00953_2.00 NN 70+% CisBP ATCTATAT 71.7% identity Open · Scan
M00959_2.00 NN 70+% CisBP GCCCTCCC 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)118
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 69.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 69.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 69.4% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 68.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 64.7% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 63.9% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 62.7% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 62.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 61.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 60.8% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 60.1% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 60.0% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 59.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 59.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 59.1% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 59.1% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 59.1% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 59.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 58.9% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 58.8% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 58.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 58.6% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 58.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 58.3% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 58.1% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 58.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 57.8% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 57.6% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.6% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 57.5% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 57.3% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 56.8% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.8% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 56.8% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 56.8% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 56.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 56.7% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 56.6% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 56.5% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 56.1% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 56.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 56.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 55.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 55.9% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 55.7% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 55.4% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 55.3% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 55.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 55.1% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 54.8% identity Open · Scan
MA0130.1 NN 70-40% JASPAR ATCCAC 54.8% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.6% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 54.5% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 54.4% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 54.4% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 54.4% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 54.1% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 53.8% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.8% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 53.7% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 53.6% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 53.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 53.4% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 53.3% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 53.3% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 53.3% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 53.1% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 53.1% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 53.1% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 53.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.9% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 52.8% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.7% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 52.6% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 52.5% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 52.4% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 52.3% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 52.3% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 52.3% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 52.2% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 52.2% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 52.2% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 52.1% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 52.1% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 52.1% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 52.1% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 52.1% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 51.9% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 51.9% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 51.6% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.6% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 51.6% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 51.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.5% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.4% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 51.4% identity Open · Scan
M10303_2.00 NN 70-40% CisBP TACTGGGAATACC 51.4% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 51.3% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 51.2% identity Open · Scan
MA1593.1 NN 70-40% JASPAR TAACAGCAGACT 51.2% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 51.0% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 50.6% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 50.6% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 50.5% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 50.4% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 50.3% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.2% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.2% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 50.1% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 687 aa
342-486

Region 342-486 0 PWM

Residues
145 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF23561 · C2H2 zinc finger
3D models
1 active PDB
Templates
2I13
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 342-4861 model
Actions
Predicted = Low TFS_J3KQC8:342:486_2i13_A_1 2i13 342-486 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
13-54PF01352KRAB boxNo overlap with loaded model regions
352-374PF00096Zinc finger, C2H2 typeoverlaps 342-486
380-402PF00096Zinc finger, C2H2 typeoverlaps 342-486
408-430PF00096Zinc finger, C2H2 typeoverlaps 342-486
436-458PF00096Zinc finger, C2H2 typeoverlaps 342-486
466-490PF23561C2H2 zinc fingeroverlaps 342-486
492-514PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
520-542PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
548-570PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
576-598PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
604-626PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
632-654PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
660-682PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions