ModCRE DB

Transcription factor

K7EK80 - ZNF540

Zinc finger protein 540

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 552 aa

1 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07634_2.00 Known CisBP AAACGTCCACG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 552 aa
187-462

Region 187-462 0 PWM

Residues
276 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 187-4621 model
Actions
Predicted = Low TFS_K7EK80:187:462_5v3j_E_1 5v3j 187-462 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
5-46PF01352KRAB boxNo overlap with loaded model regions
187-209PF00096Zinc finger, C2H2 typeoverlaps 187-462
215-237PF00096Zinc finger, C2H2 typeoverlaps 187-462
243-265PF00096Zinc finger, C2H2 typeoverlaps 187-462
271-293PF00096Zinc finger, C2H2 typeoverlaps 187-462
299-321PF00096Zinc finger, C2H2 typeoverlaps 187-462
327-349PF00096Zinc finger, C2H2 typeoverlaps 187-462
355-377PF00096Zinc finger, C2H2 typeoverlaps 187-462
383-405PF00096Zinc finger, C2H2 typeoverlaps 187-462
411-433PF00096Zinc finger, C2H2 typeoverlaps 187-462
439-461PF00096Zinc finger, C2H2 typeoverlaps 187-462
467-489PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
495-517PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
523-545PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions