ModCRE DB

Transcription factor

K7EP55 - ZNF253

Zinc finger protein 253

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 214 aa

102 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70+% CisBP ACGTCCTCT 75.9% identity Open · Scan
M07687_2.00 NN 70+% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 72.0% identity Open · Scan
M07565_2.00 NN 70+% CisBP CCTCTGGGGGCTCGTCCA 71.6% identity Open · Scan
Nearest Neighbor (70% - 40%)99
MotifPredictionSourceDNA bindingSupportLogoActions
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 69.3% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 66.3% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 64.5% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 63.5% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 63.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 62.6% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 62.3% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 62.1% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.4% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 60.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 59.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 59.0% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 58.5% identity Open · Scan
M05847_2.00 NN 70-40% CisBP AGACCTACTATGC 58.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 58.2% identity Open · Scan
MA1585.1 NN 70-40% JASPAR ATAGTAGGTG 58.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.8% identity Open · Scan
M08977_2.00 NN 70-40% CisBP AAATCACAGC 57.6% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 57.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.1% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 56.4% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 56.4% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 55.8% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 55.7% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 55.7% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 55.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 55.1% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 55.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 55.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 55.0% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 55.0% identity Open · Scan
M00785_2.00 NN 70-40% CisBP TTCACTTCCT 54.7% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.6% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 54.5% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.1% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 54.0% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 53.8% identity Open · Scan
MA1652.1 NN 70-40% JASPAR GGAGGAGGTGAGAA 53.8% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.7% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 53.7% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 53.5% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 53.5% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 53.5% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 53.5% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 53.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.2% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 52.8% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 52.8% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 52.8% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 52.8% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.5% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 52.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.5% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 52.5% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 52.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 52.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 52.1% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 52.1% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.1% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 52.1% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 52.0% identity Open · Scan
M04409_2.00 NN 70-40% CisBP GGCGGCCATTTTGG 51.9% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 51.8% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 51.7% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.6% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 51.4% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 51.4% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 51.4% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 51.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.4% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.4% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 51.3% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 51.0% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 51.0% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 50.7% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 50.7% identity Open · Scan
MA0038.1 NN 70-40% JASPAR CAAATCACTG 50.7% identity Open · Scan
MA0038.2 NN 70-40% JASPAR CAAATCACTGCA 50.7% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 50.7% identity Open · Scan
M04587_2.00 NN 70-40% CisBP GTACCTACCGC 50.6% identity Open · Scan
M03686_2.00 NN 70-40% CisBP TGATTGCTCTTTT 50.3% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.3% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 50.3% identity Open · Scan
M00224_2.00 NN 70-40% CisBP CCCGCCCC 50.0% identity Open · Scan
M01540_2.00 NN 70-40% CisBP CTCCCCC 50.0% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.0% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.0% identity Open · Scan
M08239_2.00 NN 70-40% CisBP GGGCCGCTCTAGGCTGCCGG 50.0% identity Open · Scan
M10391_2.00 NN 70-40% CisBP TACCCCACATTTATTTA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 214 aa
108-187

Region 108-187 0 PWM

Residues
80 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF13465 · Zinc-finger double domain
3D models
1 active PDB
Templates
2KMK
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 108-1871 model
Actions
Predicted = Low TFS_K7EP55:108:187_2kmk_A_1 2kmk 108-187 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
108-130PF00096Zinc finger, C2H2 typeoverlaps 108-187
150-175PF13465Zinc-finger double domainoverlaps 108-187
178-203PF13465Zinc-finger double domainoverlaps 108-187