ModCRE DB

Transcription factor

M0QWZ8 - ZNF550

Zinc finger protein 550

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 339 aa

129 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)124
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 62.9% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 62.1% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 62.1% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 62.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 61.9% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 60.7% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 60.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 60.6% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 60.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 59.9% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 59.4% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 59.4% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 59.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 59.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 58.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 58.5% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 58.5% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 58.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.5% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 58.4% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 58.4% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 58.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 58.1% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 58.1% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 58.1% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 58.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 58.1% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 58.0% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 57.9% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 57.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 57.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 57.2% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 57.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 56.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.7% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 56.6% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.4% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 56.3% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 56.3% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 56.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.1% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 56.1% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 56.0% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 55.9% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 55.9% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 55.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.6% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 55.5% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 55.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 55.1% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 55.1% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 55.0% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 55.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 55.0% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 54.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 54.6% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 54.5% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 54.4% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 54.4% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 54.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.2% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 54.1% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 54.1% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 53.9% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 53.8% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 53.7% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 53.7% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 53.7% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 53.5% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 53.5% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 53.5% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 53.5% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 53.5% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 53.5% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 53.5% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 53.4% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 53.3% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 53.3% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 53.3% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 53.2% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 53.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 52.8% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 52.8% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 52.6% identity Open · Scan
M07595_2.00 NN 70-40% CisBP GCCTGTTCCTCTCCC 52.4% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 52.4% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 52.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.3% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 52.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.8% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 51.7% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.5% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 51.5% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 51.3% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 51.3% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 51.3% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 51.2% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 51.2% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 51.1% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.0% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.6% identity Open · Scan
M07680_2.00 NN 70-40% CisBP AACCCCAAC 50.4% identity Open · Scan
M07631_2.00 NN 70-40% CisBP AATTTCAAAAATGCTATGGGC 50.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5v3j_E_1 ModCRE Homology model GCCCCCCGCCCCCCCCCCCCCAC Region 113-339 · 1 3D model Open · Scan
TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5v3m_C_1 ModCRE Homology model CGCCCCACTCACCAACCCCGTCAC Region 113-339 · 1 3D model Open · Scan
TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5wjq_D_1 ModCRE Homology model CGGCCCGGCCCCCCCCCCACACCCCCCA Region 113-339 · 1 3D model Open · Scan
TFS_tr_M0QWZ8_M0QWZ8_HUMAN:185:338_2i13_A_1 ModCRE Homology model TCTGCTTACTAGGCCGTGGGT Region 185-338 · 1 3D model Open · Scan
TFS_tr_M0QWZ8_M0QWZ8_HUMAN:229:339_5ei9_E_1 ModCRE Homology model CGCCCGCCACCTGAGCC Region 229-339 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 339 aa
113-339

Region 113-339 5 PWM

Residues
227 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 113-3396 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_M0QWZ8_M0QWZ8_HUMAN:230:281_1llm_C_1 1llm 230-281 View model · PDB
Predicted = Low TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5v3j_E_1 5v3j 113-339 View model · PDB
Predicted = Low TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5v3m_C_1 5v3m 113-339 View model · PDB
Predicted = Low TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5wjq_D_1 5wjq 113-339 View model · PDB
Predicted = Low TFS_tr_M0QWZ8_M0QWZ8_HUMAN:185:338_2i13_A_1 2i13 185-338 View model · PDB
Predicted = Low TFS_tr_M0QWZ8_M0QWZ8_HUMAN:229:339_5ei9_E_1 5ei9 229-339 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 113:339 229 339 P:E · DNA:A,B 55.9% / 71.2% 100 View · PDB TFS_tr_M0QWZ8_M0QWZ8_HUMAN:229:339_5ei9_E_1
4 2i13 113:339 185 338 P:A · DNA:C,D 53.9% / 64.9% 100 View · PDB TFS_tr_M0QWZ8_M0QWZ8_HUMAN:185:338_2i13_A_1
2 5v3m 113:339 113 339 P:C · DNA:A,B 52.0% / 66.5% 81 View · PDB TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5v3m_C_1
3 5v3j 113:339 113 339 P:E · DNA:A,B 52.0% / 66.5% 81 View · PDB TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5v3j_E_1
1 5wjq 113:339 113 339 P:D · DNA:A,B 52.0% / 66.1% 80 View · PDB TFS_tr_M0QWZ8_M0QWZ8_HUMAN:113:339_5wjq_D_1
1 1llm 113:339 230,230 281,281 P:C,D · DNA:A,B 46.2% / 59.6% 59,61 View · PDB DIMER_tr_M0QWZ8_M0QWZ8_HUMAN:230:281_1llm_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
120-142PF00096Zinc finger, C2H2 typeoverlaps 113-339
148-170PF00096Zinc finger, C2H2 typeoverlaps 113-339
176-195PF00096Zinc finger, C2H2 typeoverlaps 113-339
204-226PF00096Zinc finger, C2H2 typeoverlaps 113-339
232-254PF00096Zinc finger, C2H2 typeoverlaps 113-339
260-282PF00096Zinc finger, C2H2 typeoverlaps 113-339
288-310PF00096Zinc finger, C2H2 typeoverlaps 113-339
316-338PF00096Zinc finger, C2H2 typeoverlaps 113-339