ModCRE DB

Transcription factor

M0QXD6 - GTF2F1

Transcription initiation factor IIF subunit alpha

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 433 aa

1 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE1
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_M0QXD6_M0QXD6_HUMAN:84:96_6o9l_S_1 ModCRE Homology model GGCCCC Region 84-96 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 433 aa
1-82
84-96

Region 1-82 0 PWM

Residues
82 aa
Domains
PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
3D models
1 active PDB · 1 summary row
Templates
6O9L
Sources
Predicted = Low
Scan this region Show models

Region 84-96 1 PWM

Residues
13 aa
Domains
PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
3D models
4 active PDBs
Templates
5IY6, 5IYA, 5IYB, 6O9L
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 1 summary row
Region 1-821 model · 1 summary row
Actions
Predicted = Low TFS_tr_M0QXD6_M0QXD6_HUMAN:1:82_6o9l_S_1 6o9l 1-82 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6o9l 1:82 1 82 P:S · DNA:X,Y 100.0% / 100.0% 46 View · PDB TFS_tr_M0QXD6_M0QXD6_HUMAN:1:82_6o9l_S_1
Region 84-964 models
Actions
Predicted = Low TFS_tr_M0QXD6_M0QXD6_HUMAN:84:96_5iy6_S_1 5iy6 84-96 View model · PDB
Predicted = Low TFS_tr_M0QXD6_M0QXD6_HUMAN:84:96_5iya_S_1 5iya 84-96 View model · PDB
Predicted = Low TFS_tr_M0QXD6_M0QXD6_HUMAN:84:96_5iyb_S_1 5iyb 84-96 View model · PDB
Predicted = Low TFS_tr_M0QXD6_M0QXD6_HUMAN:84:96_6o9l_S_1 6o9l 84-96 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
82-433PF05793Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)overlaps 1-82overlaps 84-96