ModCRE DB

Transcription factor

M0QY24 - ZNF546

Zinc finger protein 546

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 810 aa

74 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)70
MotifPredictionSourceDNA bindingSupportLogoActions
M00959_2.00 NN 70-40% CisBP GCCCTCCC 68.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 67.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 67.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 65.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 65.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 65.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 64.1% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.9% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 61.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 60.6% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 59.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 58.2% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 58.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.4% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 57.3% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 57.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.6% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 56.6% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 56.4% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.6% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 55.4% identity Open · Scan
M04480_2.00 NN 70-40% CisBP ATTGATTACCCACCCTAC 55.1% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 54.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 54.4% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.4% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 54.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 54.2% identity Open · Scan
MA0038.1 NN 70-40% JASPAR CAAATCACTG 53.8% identity Open · Scan
MA0038.2 NN 70-40% JASPAR CAAATCACTGCA 53.8% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 53.6% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.5% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 53.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.9% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.8% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 52.4% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.0% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 52.0% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 51.9% identity Open · Scan
M07634_2.00 NN 70-40% CisBP AAACGTCCACG 51.8% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 51.8% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.4% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.3% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 50.9% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.8% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.8% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.7% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 50.4% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.2% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 50.0% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 50.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_M0QY24_M0QY24_HUMAN:191:466_5v3j_E_1 ModCRE Homology model GGCCGGGGGGGGGGCCCCCCGGGGGG Region 191-466 · 1 3D model Open · Scan
TFS_tr_M0QY24_M0QY24_HUMAN:191:466_5v3m_C_1 ModCRE Homology model TGCGGCCCCCGGGGGGGGGGGGGCCC Region 191-466 · 1 3D model Open · Scan
TFS_tr_M0QY24_M0QY24_HUMAN:357:634_5wjq_D_1 ModCRE Homology model GGGGGGGGGCACGTGGTCCTACGCTGGG Region 357-634 · 1 3D model Open · Scan
TFS_tr_M0QY24_M0QY24_HUMAN:648:801_2i13_A_1 ModCRE Homology model GTGGCGTTGGTCCTAGTAGTT Region 648-801 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 810 aa
191-801

Region 191-801 4 PWM

Residues
611 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 191-8016 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_M0QY24_M0QY24_HUMAN:694:741_1llm_D_1 1llm 694-741 View model · PDB
Predicted = Low TFS_tr_M0QY24_M0QY24_HUMAN:191:466_5v3j_E_1 5v3j 191-466 View model · PDB
Predicted = Low TFS_tr_M0QY24_M0QY24_HUMAN:191:466_5v3m_C_1 5v3m 191-466 View model · PDB
Predicted = Low TFS_tr_M0QY24_M0QY24_HUMAN:357:634_5wjq_D_1 5wjq 357-634 View model · PDB
Predicted = Low TFS_tr_M0QY24_M0QY24_HUMAN:359:657_7w1m_H_1 7w1m 359-657 View model · PDB
Predicted = Low TFS_tr_M0QY24_M0QY24_HUMAN:648:801_2i13_A_1 2i13 648-801 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 165:804 648 801 P:A · DNA:C,D 59.1% / 66.9% 100 View · PDB TFS_tr_M0QY24_M0QY24_HUMAN:648:801_2i13_A_1
1 5wjq 165:804 357 634 P:D · DNA:A,B 57.9% / 71.9% 98 View · PDB TFS_tr_M0QY24_M0QY24_HUMAN:357:634_5wjq_D_1
2 5v3m 165:804 191 466 P:C · DNA:A,B 55.4% / 71.0% 99 View · PDB TFS_tr_M0QY24_M0QY24_HUMAN:191:466_5v3m_C_1
3 5v3j 165:804 191 466 P:E · DNA:A,B 55.4% / 71.0% 99 View · PDB TFS_tr_M0QY24_M0QY24_HUMAN:191:466_5v3j_E_1
1 1llm 165:804 694,694 741,741 P:C,D · DNA:A,B 50.0% / 62.5% 55,56 View · PDB DIMER_tr_M0QY24_M0QY24_HUMAN:694:741_1llm_D_1
5 7w1m 165:804 359 657 P:H · DNA:F,G 35.1% / 49.0% 92 View · PDB TFS_tr_M0QY24_M0QY24_HUMAN:359:657_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
33-74PF01352KRAB boxNo overlap with loaded model regions
191-213PF00096Zinc finger, C2H2 typeoverlaps 191-801
219-241PF00096Zinc finger, C2H2 typeoverlaps 191-801
247-269PF00096Zinc finger, C2H2 typeoverlaps 191-801
275-297PF00096Zinc finger, C2H2 typeoverlaps 191-801
303-325PF00096Zinc finger, C2H2 typeoverlaps 191-801
331-353PF00096Zinc finger, C2H2 typeoverlaps 191-801
359-381PF00096Zinc finger, C2H2 typeoverlaps 191-801
387-409PF00096Zinc finger, C2H2 typeoverlaps 191-801
415-437PF00096Zinc finger, C2H2 typeoverlaps 191-801
443-465PF00096Zinc finger, C2H2 typeoverlaps 191-801
471-493PF00096Zinc finger, C2H2 typeoverlaps 191-801
499-521PF00096Zinc finger, C2H2 typeoverlaps 191-801
527-549PF00096Zinc finger, C2H2 typeoverlaps 191-801
555-577PF00096Zinc finger, C2H2 typeoverlaps 191-801
583-605PF00096Zinc finger, C2H2 typeoverlaps 191-801
611-633PF00096Zinc finger, C2H2 typeoverlaps 191-801
639-661PF00096Zinc finger, C2H2 typeoverlaps 191-801
695-717PF00096Zinc finger, C2H2 typeoverlaps 191-801
723-745PF00096Zinc finger, C2H2 typeoverlaps 191-801
751-773PF00096Zinc finger, C2H2 typeoverlaps 191-801
779-801PF00096Zinc finger, C2H2 typeoverlaps 191-801