ModCRE DB

Transcription factor

M0QY62 - ZNF587B

Zinc finger protein 587B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 633 aa

50 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)44
MotifPredictionSourceDNA bindingSupportLogoActions
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 68.9% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 64.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.0% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 60.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 58.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 57.6% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 56.9% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 56.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 56.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.4% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 55.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.7% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.9% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.1% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 52.9% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 51.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.7% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 50.9% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 50.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.7% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 50.7% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.7% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.5% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 50.5% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.2% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 50.2% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 50.1% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_M0QY62_M0QY62_HUMAN:548:599_1llm_D_1 ModCRE Homology model CCCCCGCCGGGG Region 548-599 · 1 3D model Open · Scan
TFS_tr_M0QY62_M0QY62_HUMAN:298:596_7w1m_H_1 ModCRE Homology model TGTGGGGCATATTGGGTTTCTTCGCGGCCCCCGGGGCGGCGGT Region 298-596 · 1 3D model Open · Scan
TFS_tr_M0QY62_M0QY62_HUMAN:307:460_2i13_A_1 ModCRE Homology model AAGCAGAAGGTGTCCTATATT Region 307-460 · 1 3D model Open · Scan
TFS_tr_M0QY62_M0QY62_HUMAN:325:601_5v3j_E_1 ModCRE Homology model CGTTGGTTAGCGGCCCCCCCCGGGTA Region 325-601 · 1 3D model Open · Scan
TFS_tr_M0QY62_M0QY62_HUMAN:325:601_5v3m_C_1 ModCRE Homology model GGCTCGGCCCCCCCCGGGGCGGGCCG Region 325-601 · 1 3D model Open · Scan
TFS_tr_M0QY62_M0QY62_HUMAN:351:628_5wjq_D_1 ModCRE Homology model GTTAGAGCCCCCACCGCCCCCGCCCCCC Region 351-628 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 633 aa
298-628

Region 298-628 6 PWM

Residues
331 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 298-6286 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_M0QY62_M0QY62_HUMAN:548:599_1llm_D_1 1llm 548-599 View model · PDB
Predicted = Low TFS_tr_M0QY62_M0QY62_HUMAN:298:596_7w1m_H_1 7w1m 298-596 View model · PDB
Predicted = Low TFS_tr_M0QY62_M0QY62_HUMAN:307:460_2i13_A_1 2i13 307-460 View model · PDB
Predicted = Low TFS_tr_M0QY62_M0QY62_HUMAN:325:601_5v3j_E_1 5v3j 325-601 View model · PDB
Predicted = Low TFS_tr_M0QY62_M0QY62_HUMAN:325:601_5v3m_C_1 5v3m 325-601 View model · PDB
Predicted = Low TFS_tr_M0QY62_M0QY62_HUMAN:351:628_5wjq_D_1 5wjq 351-628 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 269:631 307 460 P:A · DNA:C,D 57.1% / 69.5% 100 View · PDB TFS_tr_M0QY62_M0QY62_HUMAN:307:460_2i13_A_1
1 5wjq 269:631 351 628 P:D · DNA:A,B 49.3% / 65.8% 98 View · PDB TFS_tr_M0QY62_M0QY62_HUMAN:351:628_5wjq_D_1
2 5v3m 269:631 325 601 P:C · DNA:A,B 48.4% / 66.4% 100 View · PDB TFS_tr_M0QY62_M0QY62_HUMAN:325:601_5v3m_C_1
3 5v3j 269:631 325 601 P:E · DNA:A,B 48.4% / 66.4% 100 View · PDB TFS_tr_M0QY62_M0QY62_HUMAN:325:601_5v3j_E_1
1 1llm 269:631 548,548 599,599 P:C,D · DNA:A,B 42.3% / 63.5% 59,61 View · PDB DIMER_tr_M0QY62_M0QY62_HUMAN:548:599_1llm_D_1
5 7w1m 269:631 298 596 P:H · DNA:F,G 33.4% / 49.7% 92 View · PDB TFS_tr_M0QY62_M0QY62_HUMAN:298:596_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
15-55PF01352KRAB boxNo overlap with loaded model regions
242-264PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
270-292PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
300-320PF00096Zinc finger, C2H2 typeoverlaps 298-628
326-348PF00096Zinc finger, C2H2 typeoverlaps 298-628
354-376PF00096Zinc finger, C2H2 typeoverlaps 298-628
382-404PF00096Zinc finger, C2H2 typeoverlaps 298-628
410-432PF00096Zinc finger, C2H2 typeoverlaps 298-628
438-460PF00096Zinc finger, C2H2 typeoverlaps 298-628
466-488PF00096Zinc finger, C2H2 typeoverlaps 298-628
522-544PF00096Zinc finger, C2H2 typeoverlaps 298-628
550-572PF00096Zinc finger, C2H2 typeoverlaps 298-628
578-600PF00096Zinc finger, C2H2 typeoverlaps 298-628
608-628PF00096Zinc finger, C2H2 typeoverlaps 298-628