ModCRE DB

Transcription factor

M0R0R9 - GTF2F1

Transcription initiation factor IIF subunit alpha

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 381 aa

4 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_5iy6_S_1 ModCRE Homology model TGG Region 81-240 · 1 3D model Open · Scan
TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_5iya_S_1 ModCRE Homology model CGGG Region 81-240 · 1 3D model Open · Scan
TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_6o9l_S_1 ModCRE Homology model ACGCCCGGCCCGGGCCTC Region 81-240 · 1 3D model Open · Scan
TFS_tr_M0R0R9_M0R0R9_HUMAN:84:228_5fmf_U_1 ModCRE Homology model CAAGGCAATTTTG Region 84-228 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 381 aa
81-240

Region 81-240 4 PWM

Residues
160 aa
Domains
PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
3D models
5 active PDBs · 2 summary rows
Templates
5FMF, 5IY6, 5IYA, 5IYB, 6O9L
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 2 summary rows
Region 81-2405 models · 2 summary rows
Actions
Predicted = Low TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_5iy6_S_1 5iy6 81-240 View model · PDB
Predicted = Low TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_5iya_S_1 5iya 81-240 View model · PDB
Predicted = Low TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_5iyb_S_1 5iyb 81-240 View model · PDB
Predicted = Low TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_6o9l_S_1 6o9l 81-240 View model · PDB
Predicted = Low TFS_tr_M0R0R9_M0R0R9_HUMAN:84:228_5fmf_U_1 5fmf 84-228 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6o9l 81:240 81 240 P:S · DNA:X,Y 100.0% / 100.0% 90 View · PDB TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_6o9l_S_1
2 5iya 81:240 81 240 P:S · DNA:X,Y 76.2% / 76.2% 89 View · PDB TFS_tr_M0R0R9_M0R0R9_HUMAN:81:240_5iya_S_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
77-381PF05793Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)overlaps 81-240