Region 5-127 2 PWM
- Residues
- 123 aa
- Domains
- PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
- 3D models
- 4 active PDBs · 1 summary row
- Templates
- 5FMF, 5IY6, 5IYA, 6O9L
- Sources
- Predicted = Low
Transcription factor
M0R0Z3 - GTF2F1
Transcription initiation factor IIF subunit alpha
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 127 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_M0R0Z3_M0R0Z3_HUMAN:13:100_5fmf_U_1 | ModCRE | Homology model | CGGGGGAGCAGCG | Region 13-100 · 1 3D model | Open · Scan | |
| TFS_tr_M0R0Z3_M0R0Z3_HUMAN:5:127_6o9l_S_1 | ModCRE | Homology model | AGGCCCGACGGGCA | Region 5-127 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
127 aa
5-127
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
4 active PDB models
1 summary row
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 5-1274 models · 1 summary row
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_M0R0Z3_M0R0Z3_HUMAN:13:100_5fmf_U_1 | 5fmf | 13-100 | View model · PDB |
| Predicted = Low | TFS_tr_M0R0Z3_M0R0Z3_HUMAN:5:127_5iy6_S_1 | 5iy6 | 5-127 | View model · PDB |
| Predicted = Low | TFS_tr_M0R0Z3_M0R0Z3_HUMAN:5:127_6o9l_S_1 | 6o9l | 5-127 | View model · PDB |
| Predicted = Low | TFS_tr_M0R0Z3_M0R0Z3_HUMAN:6:127_5iya_S_1 | 5iya | 6-127 | View model · PDB |
Model-summary evidence imported for this region.
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 3-127 | PF05793 | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | overlaps 5-127 |