ModCRE DB

Transcription factor

M0R1P0 - ZNF530

Zinc finger protein 530

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 566 aa

83 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)77
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 61.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 61.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 60.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.2% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.8% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 58.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 57.4% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 57.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.4% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 56.0% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 56.0% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 55.5% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 55.5% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 55.4% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 55.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.0% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 54.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 54.1% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 54.1% identity Open · Scan
M01440_2.00 NN 70-40% CisBP TACGCCAC 53.8% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 53.8% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 53.8% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 53.6% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 53.3% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.3% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.5% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.4% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 52.3% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 52.2% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 52.1% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 52.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.0% identity Open · Scan
M01453_2.00 NN 70-40% CisBP ACGCCACA 51.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 51.7% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 51.7% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.5% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.2% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 51.0% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.8% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.7% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.7% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.7% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.6% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.6% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.4% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 50.4% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 50.2% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.2% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 50.2% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 50.1% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 50.0% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_M0R1P0_M0R1P0_HUMAN:512:563_1llm_D_1 ModCRE Homology model ACCGGGCGCGGA Region 512-563 · 1 3D model Open · Scan
TFS_tr_M0R1P0_M0R1P0_HUMAN:233:532_7w1m_H_1 ModCRE Homology model AGAGGGCCAGGCCGGACTTCCGCTCCCCCTGCGGGCCCTGGAT Region 233-532 · 1 3D model Open · Scan
TFS_tr_M0R1P0_M0R1P0_HUMAN:234:509_5v3j_E_1 ModCRE Homology model CCCCCCCTTTCGGGCCGGTCCCTCTA Region 234-509 · 1 3D model Open · Scan
TFS_tr_M0R1P0_M0R1P0_HUMAN:234:509_5v3m_C_1 ModCRE Homology model GTACCTGGCCCGTCCCCCCCCCCGCT Region 234-509 · 1 3D model Open · Scan
TFS_tr_M0R1P0_M0R1P0_HUMAN:259:537_5wjq_D_1 ModCRE Homology model CGACCCGCCCGGGCCCCCCCCCGGCCCC Region 259-537 · 1 3D model Open · Scan
TFS_tr_M0R1P0_M0R1P0_HUMAN:411:564_2i13_A_1 ModCRE Homology model GAGGCTGGCTGCCTTGTAATT Region 411-564 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 566 aa
233-564

Region 233-564 6 PWM

Residues
332 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 233-5646 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_M0R1P0_M0R1P0_HUMAN:512:563_1llm_D_1 1llm 512-563 View model · PDB
Predicted = Low TFS_tr_M0R1P0_M0R1P0_HUMAN:233:532_7w1m_H_1 7w1m 233-532 View model · PDB
Predicted = Low TFS_tr_M0R1P0_M0R1P0_HUMAN:234:509_5v3j_E_1 5v3j 234-509 View model · PDB
Predicted = Low TFS_tr_M0R1P0_M0R1P0_HUMAN:234:509_5v3m_C_1 5v3m 234-509 View model · PDB
Predicted = Low TFS_tr_M0R1P0_M0R1P0_HUMAN:259:537_5wjq_D_1 5wjq 259-537 View model · PDB
Predicted = Low TFS_tr_M0R1P0_M0R1P0_HUMAN:411:564_2i13_A_1 2i13 411-564 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 202:566 411 564 P:A · DNA:C,D 57.1% / 72.1% 100 View · PDB TFS_tr_M0R1P0_M0R1P0_HUMAN:411:564_2i13_A_1
1 5wjq 202:566 259 537 P:D · DNA:A,B 52.0% / 70.6% 99 View · PDB TFS_tr_M0R1P0_M0R1P0_HUMAN:259:537_5wjq_D_1
2 5v3m 202:566 234 509 P:C · DNA:A,B 51.4% / 69.6% 99 View · PDB TFS_tr_M0R1P0_M0R1P0_HUMAN:234:509_5v3m_C_1
3 5v3j 202:566 234 509 P:E · DNA:A,B 51.4% / 69.6% 99 View · PDB TFS_tr_M0R1P0_M0R1P0_HUMAN:234:509_5v3j_E_1
1 1llm 202:566 512,512 563,563 P:C,D · DNA:A,B 42.3% / 67.3% 59,61 View · PDB DIMER_tr_M0R1P0_M0R1P0_HUMAN:512:563_1llm_D_1
5 7w1m 202:566 233 532 P:H · DNA:F,G 35.3% / 53.1% 93 View · PDB TFS_tr_M0R1P0_M0R1P0_HUMAN:233:532_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-21PF01352KRAB boxNo overlap with loaded model regions
206-228PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
234-256PF00096Zinc finger, C2H2 typeoverlaps 233-564
262-284PF00096Zinc finger, C2H2 typeoverlaps 233-564
290-312PF00096Zinc finger, C2H2 typeoverlaps 233-564
318-340PF00096Zinc finger, C2H2 typeoverlaps 233-564
374-396PF00096Zinc finger, C2H2 typeoverlaps 233-564
402-424PF00096Zinc finger, C2H2 typeoverlaps 233-564
430-452PF00096Zinc finger, C2H2 typeoverlaps 233-564
458-480PF00096Zinc finger, C2H2 typeoverlaps 233-564
486-508PF00096Zinc finger, C2H2 typeoverlaps 233-564
514-536PF00096Zinc finger, C2H2 typeoverlaps 233-564
542-564PF00096Zinc finger, C2H2 typeoverlaps 233-564