ModCRE DB

Transcription factor

M0R2M4 - ZNF551

Zinc finger protein 551

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 556 aa

64 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)63
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 62.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 62.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 62.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.9% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 60.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 60.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 60.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 59.5% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 59.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 59.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 58.8% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 58.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 55.6% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 55.6% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 55.3% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 55.2% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 55.0% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 54.8% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 54.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 54.3% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 54.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.1% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.1% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 54.0% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 53.8% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 53.7% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.2% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 53.1% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 52.8% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.9% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 51.9% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.8% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 51.7% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 51.7% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.3% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 51.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 51.1% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 51.1% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 50.7% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.6% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.6% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.4% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 50.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.2% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 50.0% identity Open · Scan
ModCRE1
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_M0R2M4_M0R2M4_HUMAN:444:554_5ei9_E_1 ModCRE Homology model ACCCCGGGGGGGGGCCC Region 444-554 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 556 aa
251-554

Region 251-554 1 PWM

Residues
304 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 6 summary rows
Region 251-5547 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_M0R2M4_M0R2M4_HUMAN:445:496_1llm_C_1 1llm 445-496 View model · PDB
Predicted = Low TFS_tr_M0R2M4_M0R2M4_HUMAN:251:549_7w1m_H_1 7w1m 251-549 View model · PDB
Predicted = Low TFS_tr_M0R2M4_M0R2M4_HUMAN:276:554_5wjq_D_1 5wjq 276-554 View model · PDB
Predicted = Low TFS_tr_M0R2M4_M0R2M4_HUMAN:278:554_5v3j_E_1 5v3j 278-554 View model · PDB
Predicted = Low TFS_tr_M0R2M4_M0R2M4_HUMAN:278:554_5v3m_C_1 5v3m 278-554 View model · PDB
Predicted = Low TFS_tr_M0R2M4_M0R2M4_HUMAN:316:469_2i13_A_1 2i13 316-469 View model · PDB
Predicted = Low TFS_tr_M0R2M4_M0R2M4_HUMAN:444:554_5ei9_E_1 5ei9 444-554 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 251:556 316 469 P:A · DNA:C,D 57.8% / 69.5% 100 View · PDB TFS_tr_M0R2M4_M0R2M4_HUMAN:316:469_2i13_A_1
1 5v3m 251:556 278 554 P:C · DNA:A,B 49.8% / 70.0% 100 View · PDB TFS_tr_M0R2M4_M0R2M4_HUMAN:278:554_5v3m_C_1
2 5v3j 251:556 278 554 P:E · DNA:A,B 49.8% / 70.0% 100 View · PDB TFS_tr_M0R2M4_M0R2M4_HUMAN:278:554_5v3j_E_1
3 5wjq 251:556 276 554 P:D · DNA:A,B 49.1% / 69.5% 99 View · PDB TFS_tr_M0R2M4_M0R2M4_HUMAN:276:554_5wjq_D_1
1 1llm 251:556 445,445 496,496 P:C,D · DNA:A,B 42.3% / 61.5% 59,61 View · PDB DIMER_tr_M0R2M4_M0R2M4_HUMAN:445:496_1llm_C_1
5 7w1m 251:556 251 549 P:H · DNA:F,G 33.4% / 52.9% 92 View · PDB TFS_tr_M0R2M4_M0R2M4_HUMAN:251:549_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-41PF01352KRAB boxNo overlap with loaded model regions
307-329PF00096Zinc finger, C2H2 typeoverlaps 251-554
335-357PF00096Zinc finger, C2H2 typeoverlaps 251-554
363-385PF00096Zinc finger, C2H2 typeoverlaps 251-554
391-413PF00096Zinc finger, C2H2 typeoverlaps 251-554
419-441PF00096Zinc finger, C2H2 typeoverlaps 251-554
447-469PF00096Zinc finger, C2H2 typeoverlaps 251-554
475-497PF00096Zinc finger, C2H2 typeoverlaps 251-554
503-525PF00096Zinc finger, C2H2 typeoverlaps 251-554
531-553PF00096Zinc finger, C2H2 typeoverlaps 251-554