ModCRE DB

Transcription factor

M0R2M9

merged

Organism unknown

23 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)11
MotifPredictionSourceDNA bindingSupportLogoActions
MA1100.1 NN 70-40% JASPAR GCAGCAGCTGGCG 59.3% identity Open · Scan
MA0816.1 NN 70-40% JASPAR AGCAGCTGCT 58.6% identity Open · Scan
MA0500.1 NN 70-40% JASPAR GACAGCTGCAG 51.9% identity Open · Scan
MA0500.2 NN 70-40% JASPAR CAGCAGCTGCTG 51.9% identity Open · Scan
M00756_2.00 NN 70-40% CisBP CGCAGCTGTG 51.0% identity Open · Scan
MA0048.1 NN 70-40% JASPAR GCGCAGCTGCGT 51.0% identity Open · Scan
MA1529.1 NN 70-40% JASPAR GGGCCGCAGCTGCGTCCC 51.0% identity Open · Scan
MA1641.1 NN 70-40% JASPAR GAACAGCTGTTC 51.0% identity Open · Scan
M04156_2.00 NN 70-40% CisBP AACAGCTGACGC 50.0% identity Open · Scan
MA1485.1 NN 70-40% JASPAR GCAACAGCTGTTAC 50.0% identity Open · Scan
MA1618.1 NN 70-40% JASPAR AAACAGATGTTTA 50.0% identity Open · Scan
ModCRE12
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_M0R2M9_M0R2M9_HUMAN:116:136_1am9_B_1 ModCRE Homology model TACGCGTGGGGGTCGCGGGATCCCCCTGCGTA Region 116-136 · 1 3D model Open · Scan
DIMER_tr_M0R2M9_M0R2M9_HUMAN:116:136_1am9_C_1 ModCRE Homology model ACGCGGTCACGCGCGTCGCGGTA Region 116-136 · 1 3D model Open · Scan
DIMER_tr_M0R2M9_M0R2M9_HUMAN:116:136_1am9_D_1 ModCRE Homology model ACGTTGTCACACGTGTCGCGGTG Region 116-136 · 1 3D model Open · Scan
DIMER_tr_M0R2M9_M0R2M9_HUMAN:87:141_2ql2_B_1 ModCRE Homology model CCCAACATATGGCTCC Region 87-141 · 1 3D model Open · Scan
DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:137_7z5i_B_1 ModCRE Homology model CCCACACAGCTGCTGGGG Region 91-137 · 1 3D model Open · Scan
DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:138_7z5k_B_1 ModCRE Homology model CACACACAGCTTTTGGGG Region 91-138 · 1 3D model Open · Scan
DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:139_1mdy_A_1 ModCRE Homology model GACACAGCTGTGTC Region 91-139 · 1 3D model Open · Scan
TFS_tr_M0R2M9_M0R2M9_HUMAN:87:141_2ql2_B_1 ModCRE Homology model GCCCACAGCTGCTGCA Region 87-141 · 1 3D model Open · Scan
TFS_tr_M0R2M9_M0R2M9_HUMAN:89:140_2ypa_A_1 ModCRE Homology model TCACAGGTGGG Region 89-140 · 1 3D model Open · Scan
TFS_tr_M0R2M9_M0R2M9_HUMAN:89:140_2ypb_A_1 ModCRE Homology model ACACAGAGTGG Region 89-140 · 1 3D model Open · Scan
TFS_tr_M0R2M9_M0R2M9_HUMAN:91:138_7z5k_B_1 ModCRE Homology model CCCCAAAAGCTGTGTGTG Region 91-138 · 1 3D model Open · Scan
TFS_tr_M0R2M9_M0R2M9_HUMAN:91:139_1mdy_A_1 ModCRE Homology model GACAAAGCTGTGTA Region 91-139 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

Region 87-141 12 PWM

Residues
55 aa
Domains
No overlapping PFAM annotation recorded
3D models
12 active PDBs · 10 summary rows
Templates
1AM9, 1MDY, 2QL2, 2YPA, 2YPB, 7Z5I, 7Z5K
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 10 summary rows
Region 87-14112 models · 10 summary rows
Actions
Predicted = Low DIMER_tr_M0R2M9_M0R2M9_HUMAN:116:136_1am9_B_1 1am9 116-136 View model · PDB
Predicted = Low DIMER_tr_M0R2M9_M0R2M9_HUMAN:116:136_1am9_C_1 1am9 116-136 View model · PDB
Predicted = Low DIMER_tr_M0R2M9_M0R2M9_HUMAN:116:136_1am9_D_1 1am9 116-136 View model · PDB
Predicted = Low DIMER_tr_M0R2M9_M0R2M9_HUMAN:87:141_2ql2_B_1 2ql2 87-141 View model · PDB
Predicted = Low DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:137_7z5i_B_1 7z5i 91-137 View model · PDB
Predicted = Low DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:138_7z5k_B_1 7z5k 91-138 View model · PDB
Predicted = Low DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:139_1mdy_A_1 1mdy 91-139 View model · PDB
Predicted = Low TFS_tr_M0R2M9_M0R2M9_HUMAN:87:141_2ql2_B_1 2ql2 87-141 View model · PDB
Predicted = Low TFS_tr_M0R2M9_M0R2M9_HUMAN:89:140_2ypa_A_1 2ypa 89-140 View model · PDB
Predicted = Low TFS_tr_M0R2M9_M0R2M9_HUMAN:89:140_2ypb_A_1 2ypb 89-140 View model · PDB
Predicted = Low TFS_tr_M0R2M9_M0R2M9_HUMAN:91:138_7z5k_B_1 7z5k 91-138 View model · PDB
Predicted = Low TFS_tr_M0R2M9_M0R2M9_HUMAN:91:139_1mdy_A_1 1mdy 91-139 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 1am9 87:141 116,116 136,136 P:C,D · DNA:E,F,G,H 52.4% / 71.4% 25,27 View · PDB DIMER_tr_M0R2M9_M0R2M9_HUMAN:116:136_1am9_C_1
5 1am9 87:141 116,116 136,136 P:B,D · DNA:E,F,G,H 52.4% / 71.4% 28,27 View · PDB DIMER_tr_M0R2M9_M0R2M9_HUMAN:116:136_1am9_B_1
1 7z5k 87:141 91,91 137,138 P:A,B · DNA:E,F 50.0% / 64.6% 82,83 View · PDB DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:138_7z5k_B_1
4 7z5k 87:141 91,91 137,138 P:A,B · DNA:E,F 50.0% / 64.6% 82,83 View · PDB TFS_tr_M0R2M9_M0R2M9_HUMAN:91:138_7z5k_B_1
2 1mdy 87:141 91,91 139,139 P:A,B · DNA:E,F 49.0% / 63.3% 70,77 View · PDB DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:139_1mdy_A_1
5 1mdy 87:141 91,91 139,139 P:A,B · DNA:E,F 49.0% / 63.3% 70,77 View · PDB TFS_tr_M0R2M9_M0R2M9_HUMAN:91:139_1mdy_A_1
3 7z5i 87:141 91,91 137,137 P:A,B · DNA:E,F 48.9% / 63.8% 82,82 View · PDB DIMER_tr_M0R2M9_M0R2M9_HUMAN:91:137_7z5i_B_1
1 2ypb 87:141 89 140 P:A · DNA:E,F 46.2% / 65.4% 77 View · PDB TFS_tr_M0R2M9_M0R2M9_HUMAN:89:140_2ypb_A_1
2 2ypa 87:141 89 140 P:A · DNA:E,F 46.2% / 65.4% 77 View · PDB TFS_tr_M0R2M9_M0R2M9_HUMAN:89:140_2ypa_A_1
3 2ql2 87:141 87 141 P:B · DNA:E,F 43.6% / 56.4% 93 View · PDB TFS_tr_M0R2M9_M0R2M9_HUMAN:87:141_2ql2_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags1
HLH