ModCRE DB

Transcription factor

M1S623 - POU5F1

POU domain protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 190 aa

31 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA1115.1 NN 70+% JASPAR ATATGCAAATT 99.4% identity Open · Scan
MA0792.1 NN 70+% JASPAR TATGCAAAT 96.3% identity Open · Scan
M08032_2.00 NN 70+% CisBP CCATTGTTATGCAAA 88.0% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 85.7% identity Open · Scan
Nearest Neighbor (70% - 40%)27
MotifPredictionSourceDNA bindingSupportLogoActions
M05500_2.00 NN 70-40% CisBP TTATGCAAATGAG 65.2% identity Open · Scan
M00553_2.00 NN 70-40% CisBP ATGCATAA 64.4% identity Open · Scan
M02236_2.00 NN 70-40% CisBP CTAATTAAC 64.4% identity Open · Scan
MA0787.1 NN 70-40% JASPAR TTATGCAAATTA 64.4% identity Open · Scan
MA0788.1 NN 70-40% JASPAR ATTATGCTAATTT 64.4% identity Open · Scan
MA0789.1 NN 70-40% JASPAR TATGCAAAT 64.4% identity Open · Scan
M07542_2.00 NN 70-40% CisBP TGCATA 63.5% identity Open · Scan
M02240_2.00 NN 70-40% CisBP ATAATGAA 63.1% identity Open · Scan
M09227_2.00 NN 70-40% CisBP CTCATGAATATTCAAG 63.1% identity Open · Scan
MA0786.1 NN 70-40% JASPAR TTATGCAAATTA 63.1% identity Open · Scan
M02243_2.00 NN 70-40% CisBP ATAATGCATA 60.3% identity Open · Scan
M02242_2.00 NN 70-40% CisBP GTATAATTAG 59.5% identity Open · Scan
M02245_2.00 NN 70-40% CisBP ATGCTAATTA 59.5% identity Open · Scan
M02235_2.00 NN 70-40% CisBP CTAATTAA 57.1% identity Open · Scan
MA0627.2 NN 70-40% JASPAR AATATGCAAATAA 56.0% identity Open · Scan
M00549_2.00 NN 70-40% CisBP GATAATGAG 54.4% identity Open · Scan
MA0627.1 NN 70-40% JASPAR TTGTATGCAAATTAGA 54.4% identity Open · Scan
M06556_2.00 NN 70-40% CisBP TATGCAAATTAG 54.3% identity Open · Scan
M10829_2.00 NN 70-40% CisBP ATATAATTATGCAAATTAAAAGA 54.0% identity Open · Scan
MA0785.1 NN 70-40% JASPAR AATATGCAAATT 54.0% identity Open · Scan
MA0507.1 NN 70-40% JASPAR TTCATTTGCATAT 52.7% identity Open · Scan
M00548_2.00 NN 70-40% CisBP GATAATTAA 52.3% identity Open · Scan
M00802_2.00 NN 70-40% CisBP ATTATTAATA 50.8% identity Open · Scan
M05454_2.00 NN 70-40% CisBP ATGCATAAATTAA 50.8% identity Open · Scan
MA0784.1 NN 70-40% JASPAR AATATGCAAATTAG 50.8% identity Open · Scan
MA0683.1 NN 70-40% JASPAR ATGCATAATTAATGAG 50.4% identity Open · Scan
MA0791.1 NN 70-40% JASPAR ATGCATAATTAATGAG 50.4% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 190 aa
1-117

Region 1-117 0 PWM

Residues
117 aa
Domains
PF00157 · Pou domain - N-terminal to homeobox domain PF00046 · Homeodomain
3D models
1 active PDB
Templates
1AU7
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-1171 model
Actions
Predicted = Low DIMER_M1S623:1:117_1au7_A_1 1au7 1-117 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-42PF00157Pou domain - N-terminal to homeobox domainoverlaps 1-117
61-117PF00046Homeodomainoverlaps 1-117