ModCRE DB

Transcription factor

O00164 - UBTF

Ribosomal RNA upstream binding transcription factor

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 654 aa

5 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_O00164_O00164_HUMAN:247:312_1hry_A_1 ModCRE Homology model ACACAAAC Region 247-312 · 1 3D model Open · Scan
TFS_tr_O00164_O00164_HUMAN:247:312_1hrz_A_1 ModCRE Homology model GCAAAAAA Region 247-312 · 1 3D model Open · Scan
TFS_tr_O00164_O00164_HUMAN:247:328_1j46_A_1 ModCRE Homology model CGGCTAAACTGAGT Region 247-328 · 1 3D model Open · Scan
TFS_tr_O00164_O00164_HUMAN:247:328_1j47_A_1 ModCRE Homology model GGGTTCCATTTTGG Region 247-328 · 1 3D model Open · Scan
TFS_tr_O00164_O00164_HUMAN:250:312_6edb_B_1 ModCRE Homology model AAACGACAATT Region 250-312 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 654 aa
247-392

Region 247-392 5 PWM

Residues
146 aa
Domains
PF00505 · HMG (high mobility group) box PF14887 · HMG (high mobility group) box 5
3D models
10 active PDBs · 5 summary rows
Templates
1HRY, 1HRZ, 1J46, 1J47, 2GZK, 4EUW, 4S2Q, 6CIJ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 5 summary rows
Region 247-39210 models · 5 summary rows
Actions
Predicted = Low TFS_tr_O00164_O00164_HUMAN:247:312_1hry_A_1 1hry 247-312 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:247:312_1hrz_A_1 1hrz 247-312 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:247:328_1j46_A_1 1j46 247-328 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:247:328_1j47_A_1 1j47 247-328 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:247:392_2gzk_A_1 2gzk 247-392 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:249:311_6cij_N_1 6cij 249-311 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:250:311_4euw_A_1 4euw 250-311 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:250:311_4s2q_D_1 4s2q 250-311 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:250:312_6edb_B_1 6edb 250-312 View model · PDB
Predicted = Low TFS_tr_O00164_O00164_HUMAN:251:311_6cim_N_1 6cim 251-311 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 6cij 231:392 249 311 P:N · DNA:G,M 38.1% / 58.7% 45 View · PDB TFS_tr_O00164_O00164_HUMAN:249:311_6cij_N_1
5 6cim 231:392 251 311 P:N · DNA:G,J 36.1% / 55.7% 64 View · PDB TFS_tr_O00164_O00164_HUMAN:251:311_6cim_N_1
3 4euw 231:392 250 311 P:A · DNA:B,C 29.0% / 61.3% 86 View · PDB TFS_tr_O00164_O00164_HUMAN:250:311_4euw_A_1
4 4s2q 231:392 250 311 P:D · DNA:A,B 29.0% / 61.3% 81 View · PDB TFS_tr_O00164_O00164_HUMAN:250:311_4s2q_D_1
1 2gzk 231:392 247 392 P:A · DNA:B,C 26.8% / 50.3% 91 View · PDB TFS_tr_O00164_O00164_HUMAN:247:392_2gzk_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
39-105PF00505HMG (high mobility group) boxNo overlap with loaded model regions
141-199PF09011HMG-box domainNo overlap with loaded model regions
249-310PF00505HMG (high mobility group) boxoverlaps 247-392
321-405PF14887HMG (high mobility group) box 5overlaps 247-392