Region 69-128 0 PWM
- Residues
- 60 aa
- Domains
- PF00010 · Helix-loop-helix DNA-binding domain
- 3D models
- 1 active PDB
- Templates
- 4H10
- Sources
- Structure model
Transcription factor
O00327 - BMAL1
Basic helix-loop-helix ARNT-like protein 1 (Aryl hydrocarbon receptor nuclear translocator-like protein 1) (Basic-helix-loop-helix-PAS protein MOP3) (Brain and muscle ARNT-like 1) (Class E basic helix-loop-helix protein 5) (bHLHe5) (Member of PAS protein 3) (PAS domain-containing protein 3) (bHLH-PAS protein JAP3)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 626 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M02787_2.00 | Known | CisBP | GTCACGTGAC | Direct PWM | Open · Scan | |
| M04124_2.00 | Known | CisBP | GTCACGTGCC | Direct PWM | Open · Scan | |
| M08725_2.00 | Known | CisBP | AGTCACGTGGC | Direct PWM | Open · Scan | |
| BMAL1_HUMAN.H11MO.0.A | Known | HOCOMOCO | GCCACGTGACT | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M04125_2.00 | NN 70+% | CisBP | GTCACATGAC | 99.8% identity | Open · Scan | |
| M09478_2.00 | NN 70+% | CisBP | CACGTGAC | 98.4% identity | Open · Scan | |
| MA0603.1 | NN 70+% | JASPAR | GGTCACGTGC | 97.1% identity | Open · Scan |
Nearest Neighbor (70% - 40%)1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M03615_2.00 | NN 70-40% | CisBP | GTCACGTGAC | 54.8% identity | Open · Scan |
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
626 aa
69-128
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 69-1281 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_O00327:69:128_4h10_A_1 | 4h10 | 69-128 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 74-126 | PF00010 | Helix-loop-helix DNA-binding domain | overlaps 69-128 |
| 149-252 | PF00989 | PAS fold | No overlap with loaded model regions |
| 339-441 | PF14598 | PAS domain | No overlap with loaded model regions |