ModCRE DB

Transcription factor

O00482 - NR5A2

Nuclear receptor subfamily 5 group A member 2 (Alpha-1-fetoprotein transcription factor) (B1-binding factor) (hB1F) (CYP7A promoter-binding factor) (Hepatocytic transcription factor) (Liver receptor homolog 1) (LRH-1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 541 aa

8 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known8
MotifPredictionSourceDNA bindingSupportLogoActions
M05590_2.00 Known CisBP TTCAAGGTCAC Direct PWM Open · Scan
M05589_2.00 Known CisBP TCAAGGTCATGACCTTGA Direct PWM Open · Scan
M05591_2.00 Known CisBP TGACCTTGAGTCAAGGTCA Direct PWM Open · Scan
M05592_2.00 Known CisBP TCAAGGTCGCGACCTTGA Direct PWM Open · Scan
M05593_2.00 Known CisBP CTCAAGGTCAC Direct PWM Open · Scan
M05594_2.00 Known CisBP TGACCTTGACTCAAGGTCA Direct PWM Open · Scan
M09271_2.00 Known CisBP GTTCAAGGCCA Direct PWM Open · Scan
NR5A2_HUMAN.H11MO.0.B Known HOCOMOCO GTTCAAGGCCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 541 aa
83-160

Region 83-160 0 PWM

Residues
78 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1BY4
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 83-1601 model
Actions
Predicted = Low DIMER_O00482:83:160_1by4_B_1 1by4 83-160 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
85-152PF00105Double treble clef zinc finger, C4 typeoverlaps 83-160
332-522PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions