ModCRE DB

Transcription factor

O00570 - SOX1

Transcription factor SOX-1

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 391 aa

41 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)8
MotifPredictionSourceDNA bindingSupportLogoActions
MA0870.1 NN 70+% JASPAR AACAATAACATTGTT 99.4% identity Open · Scan
MA1562.1 NN 70+% JASPAR CCGAACAATG 89.6% identity Open · Scan
M03979_2.00 NN 70+% CisBP AAACAATAACATTGTTT 88.8% identity Open · Scan
MA0866.1 NN 70+% JASPAR AACAATGGTAGTGTT 88.6% identity Open · Scan
M09694_2.00 NN 70+% CisBP AACAATGGAC 83.7% identity Open · Scan
M03983_2.00 NN 70+% CisBP AAACAATTTCAGTGTTT 79.7% identity Open · Scan
M03508_2.00 NN 70+% CisBP AACAATAACATTGTT 75.0% identity Open · Scan
MA1152.1 NN 70+% JASPAR CTATTGTTTT 75.0% identity Open · Scan
Nearest Neighbor (70% - 40%)33
MotifPredictionSourceDNA bindingSupportLogoActions
MA0084.1 NN 70-40% JASPAR GTAAACAAT 69.5% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 64.9% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 64.1% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 62.5% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 61.6% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 61.5% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 61.5% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 61.0% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 60.9% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 60.4% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 60.4% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 59.7% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 59.6% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 59.4% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 58.9% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 57.8% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 57.8% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 57.5% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 57.5% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 56.6% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 56.1% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 56.1% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 54.5% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 54.5% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 54.3% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 53.7% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 52.3% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 52.3% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 52.3% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 51.1% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 50.9% identity Open · Scan
M00201_2.00 NN 70-40% CisBP ATTGTTCTGC 50.6% identity Open · Scan
M05754_2.00 NN 70-40% CisBP CATTGTTC 50.6% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 391 aa
48-121

Region 48-121 0 PWM

Residues
74 aa
Domains
PF00505 · HMG (high mobility group) box PF12336 · SOX transcription factor
3D models
1 active PDB
Templates
2GZK
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 48-1211 model
Actions
Predicted = Low TFS_O00570:48:121_2gzk_A_1 2gzk 48-121 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
51-119PF00505HMG (high mobility group) boxoverlaps 48-121
120-249PF12336SOX transcription factoroverlaps 48-121