Region 1006-1127 2 PWM
- Residues
- 122 aa
- Domains
- PF01388 · ARID/BRIGHT DNA binding domain
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 1KQQ, 2OEH
- Sources
- Predicted = Low
Transcription factor
O14497 - ARID1A
AT-rich interactive domain-containing protein 1A (ARID domain-containing protein 1A) (B120) (BRG1-associated factor 250) (BAF250) (BRG1-associated factor 250a) (BAF250A) (Osa homolog 1) (hOSA1) (SWI-like protein) (SWI/SNF complex protein p270) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (hELD)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 2285 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_O14497_ARI1A_HUMAN:1006:1127_1kqq_A_1 | ModCRE | Homology model | ATATTTTGTCAA | Region 1006-1127 · 1 3D model | Open · Scan | |
| TFS_sp_O14497_ARI1A_HUMAN:1030:1114_2oeh_A_1 | ModCRE | Homology model | CTCATCGCTAAAA | Region 1030-1114 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
2285 aa
1006-1127
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models
2 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 1006-11272 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_O14497_ARI1A_HUMAN:1006:1127_1kqq_A_1 | 1kqq | 1006-1127 | View model · PDB |
| Predicted = Low | TFS_sp_O14497_ARI1A_HUMAN:1030:1114_2oeh_A_1 | 2oeh | 1030-1114 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1kqq | 1006:1127 | 1006 | 1127 | P:A · DNA:B,C | 32.5% / 60.2% | 92 | View · PDB TFS_sp_O14497_ARI1A_HUMAN:1006:1127_1kqq_A_1 |
| 2 | 2oeh | 1006:1127 | 1030 | 1114 | P:A · DNA:B,C | 22.1% / 54.7% | 79 | View · PDB TFS_sp_O14497_ARI1A_HUMAN:1030:1114_2oeh_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 1020-1104 | PF01388 | ARID/BRIGHT DNA binding domain | overlaps 1006-1127 |
| 1976-2231 | PF12031 | SWI/SNF-like complex subunit BAF250/Osa | No overlap with loaded model regions |