ModCRE DB

Transcription factor

O14529 - CUX2

Homeobox protein cut-like 2 (Homeobox protein cux-2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1486 aa

8 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known8
MotifPredictionSourceDNA bindingSupportLogoActions
MA0755.1 Known JASPAR TAATCGATAA Direct PWM Open · Scan
MA0755.2 Known JASPAR TAATCGATA Direct PWM Open · Scan
M01499_2.00 Known CisBP TGATCGGTT Direct PWM Open · Scan
M01500_2.00 Known CisBP TTATCGGTT Direct PWM Open · Scan
M02940_2.00 Known CisBP ATCGATAAAATTATCGAT Direct PWM Open · Scan
M02941_2.00 Known CisBP TTATCGATTA Direct PWM Open · Scan
M04665_2.00 Known CisBP CTGATCGATTAG Direct PWM Open · Scan
M04666_2.00 Known CisBP CTGATCGATTGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1486 aa
1169-1224

Region 1169-1224 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1169-12241 model
Actions
Predicted = Low DIMER_O14529:1169:1224_1fjl_B_1 1fjl 1169-1224 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-111PF25398CUX1-like, N-terminal tRNA-binding armNo overlap with loaded model regions
550-622PF02376CUT domainNo overlap with loaded model regions
893-963PF02376CUT domainNo overlap with loaded model regions
1044-1118PF02376CUT domainNo overlap with loaded model regions
1169-1225PF00046Homeodomainoverlaps 1169-1224