ModCRE DB

Transcription factor

O15353 - FOXN1

Forkhead box protein N1 (Winged-helix transcription factor nude)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 648 aa

25 Generated PWM 15 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)10
MotifPredictionSourceDNA bindingSupportLogoActions
M01227_2.00 NN 70-40% CisBP GTAAACAA 62.5% identity Open · Scan
MA1489.1 NN 70-40% JASPAR GTAAACAA 62.5% identity Open · Scan
M03745_2.00 NN 70-40% CisBP ATGTAAACAAA 61.2% identity Open · Scan
M04835_2.00 NN 70-40% CisBP ACGCGTCGTTACGACGCGT 61.2% identity Open · Scan
M01016_2.00 NN 70-40% CisBP TGGACGCTAA 58.7% identity Open · Scan
M10528_2.00 NN 70-40% CisBP ATAATAATATTTTT 56.4% identity Open · Scan
MA0614.1 NN 70-40% JASPAR GTAAACAA 56.4% identity Open · Scan
M03058_2.00 NN 70-40% CisBP GTAAACATAAACA 54.8% identity Open · Scan
MA1606.1 NN 70-40% JASPAR ATGTAAACAAA 51.8% identity Open · Scan
M09104_2.00 NN 70-40% CisBP CCTTGTTTACTTT 50.0% identity Open · Scan
ModCRE15
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_O15353_FOXN1_HUMAN:271:338_2a07_F_1 ModCRE Homology model CTTTGAAACAAAATTTAAC Region 271-338 · 1 3D model Open · Scan
DIMER_sp_O15353_FOXN1_HUMAN:271:338_2a07_J_1 ModCRE Homology model ACCCTTGTTTTTTTAAGAA Region 271-338 · 1 3D model Open · Scan
DIMER_sp_O15353_FOXN1_HUMAN:271:338_2a07_K_1 ModCRE Homology model TTCGGAAAAAAACAAGGGG Region 271-338 · 1 3D model Open · Scan
DIMER_sp_O15353_FOXN1_HUMAN:271:338_3qrf_G_1 ModCRE Homology model GGAAATTTTTTTTATA Region 271-338 · 1 3D model Open · Scan
DIMER_sp_O15353_FOXN1_HUMAN:271:338_4wk8_G_1 ModCRE Homology model GGAAAAATTTTTTAATGGG Region 271-338 · 1 3D model Open · Scan
DIMER_sp_O15353_FOXN1_HUMAN:271:350_6o3t_A_1 ModCRE Homology model CCCCTTTTTTAAAAACCAT Region 271-350 · 1 3D model Open · Scan
DIMER_sp_O15353_FOXN1_HUMAN:271:359_2c6y_B_1 ModCRE Homology model GGGTTTTTTTTTTTC Region 271-359 · 1 3D model Open · Scan
DIMER_sp_O15353_FOXN1_HUMAN:271:362_6ncm_B_1 ModCRE Homology model TAGCGTCTTCCGT Region 271-362 · 1 3D model Open · Scan
TFS_sp_O15353_FOXN1_HUMAN:270:350_6ako_C_1 ModCRE Homology model CCGGAAGAAACCCAGA Region 270-350 · 1 3D model Open · Scan
TFS_sp_O15353_FOXN1_HUMAN:270:350_6akp_C_1 ModCRE Homology model AAACCATGGGTAAGG Region 270-350 · 1 3D model Open · Scan
TFS_sp_O15353_FOXN1_HUMAN:270:362_6el8_A_1 ModCRE Homology model AGAAGACGCCCCC Region 270-362 · 1 3D model Open · Scan
TFS_sp_O15353_FOXN1_HUMAN:271:358_7vov_A_1 ModCRE Homology model TGTGTTCTC Region 271-358 · 1 3D model Open · Scan
TFS_sp_O15353_FOXN1_HUMAN:271:358_7vov_B_1 ModCRE Homology model TTTTAAA Region 271-358 · 1 3D model Open · Scan
TFS_sp_O15353_FOXN1_HUMAN:271:362_6nce_A_1 ModCRE Homology model CTGAAATAACCCATC Region 271-362 · 1 3D model Open · Scan
TFS_sp_O15353_FOXN1_HUMAN:271:362_6ncm_B_1 ModCRE Homology model TAGCGTCTTTCCT Region 271-362 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 648 aa
270-365

Region 270-365 15 PWM

Residues
96 aa
Domains
PF00250 · Forkhead domain
3D models
15 active PDBs · 10 summary rows
Templates
2A07, 2C6Y, 3QRF, 4WK8, 6AKO, 6AKP, 6EL8, 6NCE, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
15 active PDB models 10 summary rows
Region 270-36515 models · 10 summary rows
Actions
Predicted = Low DIMER_sp_O15353_FOXN1_HUMAN:271:338_2a07_F_1 2a07 271-338 View model · PDB
Predicted = Low DIMER_sp_O15353_FOXN1_HUMAN:271:338_2a07_J_1 2a07 271-338 View model · PDB
Predicted = Low DIMER_sp_O15353_FOXN1_HUMAN:271:338_2a07_K_1 2a07 271-338 View model · PDB
Predicted = Low DIMER_sp_O15353_FOXN1_HUMAN:271:338_3qrf_G_1 3qrf 271-338 View model · PDB
Predicted = Low DIMER_sp_O15353_FOXN1_HUMAN:271:338_4wk8_G_1 4wk8 271-338 View model · PDB
Predicted = Low DIMER_sp_O15353_FOXN1_HUMAN:271:350_6o3t_A_1 6o3t 271-350 View model · PDB
Predicted = Low DIMER_sp_O15353_FOXN1_HUMAN:271:359_2c6y_B_1 2c6y 271-359 View model · PDB
Predicted = Low DIMER_sp_O15353_FOXN1_HUMAN:271:362_6ncm_B_1 6ncm 271-362 View model · PDB
Predicted = Low TFS_sp_O15353_FOXN1_HUMAN:270:350_6ako_C_1 6ako 270-350 View model · PDB
Predicted = Low TFS_sp_O15353_FOXN1_HUMAN:270:350_6akp_C_1 6akp 270-350 View model · PDB
Predicted = Low TFS_sp_O15353_FOXN1_HUMAN:270:362_6el8_A_1 6el8 270-362 View model · PDB
Predicted = Low TFS_sp_O15353_FOXN1_HUMAN:271:358_7vov_A_1 7vov 271-358 View model · PDB
Predicted = Low TFS_sp_O15353_FOXN1_HUMAN:271:358_7vov_B_1 7vov 271-358 View model · PDB
Predicted = Low TFS_sp_O15353_FOXN1_HUMAN:271:362_6nce_A_1 6nce 271-362 View model · PDB
Predicted = Low TFS_sp_O15353_FOXN1_HUMAN:271:362_6ncm_B_1 6ncm 271-362 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6el8 267:362 270 362 P:A · DNA:B,C 94.6% / 94.6% 98 View · PDB TFS_sp_O15353_FOXN1_HUMAN:270:362_6el8_A_1
1 6ncm 267:362 271,271 362,362 P:A,B · DNA:C,D 54.3% / 69.6% 93,95 View · PDB DIMER_sp_O15353_FOXN1_HUMAN:271:362_6ncm_B_1
2 6nce 267:362 271 362 P:A · DNA:C,D 54.3% / 69.6% 94 View · PDB TFS_sp_O15353_FOXN1_HUMAN:271:362_6nce_A_1
3 6ncm 267:362 271,271 362,362 P:A,B · DNA:C,D 54.3% / 69.6% 93,95 View · PDB TFS_sp_O15353_FOXN1_HUMAN:271:362_6ncm_B_1
4 2a07 267:362 271,271 338,338 P:F,K · DNA:A,B 45.6% / 66.2% 82,81 View · PDB DIMER_sp_O15353_FOXN1_HUMAN:271:338_2a07_F_1
5 2a07 267:362 271,271 338,338 P:J,K · DNA:A,B 45.6% / 66.2% 81,81 View · PDB DIMER_sp_O15353_FOXN1_HUMAN:271:338_2a07_J_1
4 7vov 267:362 271 358 P:A · DNA:C,D 45.5% / 62.5% 93 View · PDB TFS_sp_O15353_FOXN1_HUMAN:271:358_7vov_A_1
5 7vov 267:362 271 358 P:B · DNA:C,D 45.5% / 62.5% 97 View · PDB TFS_sp_O15353_FOXN1_HUMAN:271:358_7vov_B_1
2 6o3t 267:362 271,272 350,332 P:A,B · DNA:C,D 43.8% / 63.8% 83,89 View · PDB DIMER_sp_O15353_FOXN1_HUMAN:271:350_6o3t_A_1
3 2c6y 267:362 271,271 365,359 P:A,B · DNA:C,D 42.7% / 64.0% 95,92 View · PDB DIMER_sp_O15353_FOXN1_HUMAN:271:359_2c6y_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
271-356PF00250Forkhead domainoverlaps 270-365