ModCRE DB

Transcription factor

O15405 - TOX3

TOX high mobility group box family member 3 (CAG trinucleotide repeat-containing gene F9 protein) (Trinucleotide repeat-containing gene 9 protein)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 576 aa

4 Generated PWM 4 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_O15405_TOX3_HUMAN:223:324_2gzk_A_1 ModCRE Homology model ATTGTGGTTAAACCCC Region 223-324 · 1 3D model Open · Scan
TFS_sp_O15405_TOX3_HUMAN:239:326_1j5n_A_1 ModCRE Homology model GTGAAAAAACAACTT Region 239-326 · 1 3D model Open · Scan
TFS_sp_O15405_TOX3_HUMAN:246:317_6cij_N_1 ModCRE Homology model GCCCGCTAATTCCAATT Region 246-317 · 1 3D model Open · Scan
TFS_sp_O15405_TOX3_HUMAN:253:325_3nm9_P_1 ModCRE Homology model ACGCCGCGGCGCGC Region 253-325 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 576 aa
223-326

Region 223-326 4 PWM

Residues
104 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
4 active PDBs · 4 summary rows
Templates
1J5N, 2GZK, 3NM9, 6CIJ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
4 active PDB models 4 summary rows
Region 223-3264 models · 4 summary rows
Actions
Predicted = Low TFS_sp_O15405_TOX3_HUMAN:223:324_2gzk_A_1 2gzk 223-324 View model · PDB
Predicted = Low TFS_sp_O15405_TOX3_HUMAN:239:326_1j5n_A_1 1j5n 239-326 View model · PDB
Predicted = Low TFS_sp_O15405_TOX3_HUMAN:246:317_6cij_N_1 6cij 246-317 View model · PDB
Predicted = Low TFS_sp_O15405_TOX3_HUMAN:253:325_3nm9_P_1 3nm9 253-325 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 6cij 223:326 246 317 P:N · DNA:G,M 40.3% / 63.9% 52 View · PDB TFS_sp_O15405_TOX3_HUMAN:246:317_6cij_N_1
2 1j5n 223:326 239 326 P:A · DNA:B,C 38.6% / 60.2% 94 View · PDB TFS_sp_O15405_TOX3_HUMAN:239:326_1j5n_A_1
1 2gzk 223:326 223 324 P:A · DNA:B,C 38.2% / 58.8% 64 View · PDB TFS_sp_O15405_TOX3_HUMAN:223:324_2gzk_A_1
4 3nm9 223:326 253 325 P:P · DNA:E,F,H,I,K,L 30.1% / 58.9% 97 View · PDB TFS_sp_O15405_TOX3_HUMAN:253:325_3nm9_P_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
255-323PF00505HMG (high mobility group) boxoverlaps 223-326