Region 52-95 6 PWM
- Residues
- 44 aa
- Domains
- PF02008 · CXXC zinc finger domain
- 3D models
- 6 active PDBs · 6 summary rows
- Templates
- 1HCQ, 3QMG, 3QMH, 3QMI, 5W9S, 6ASD
- Sources
- Predicted = Low
Transcription factor
O43151 - TET3
Methylcytosine dioxygenase TET3 (EC 1.14.11.80)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1795 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE6
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| DIMER_sp_O43151_TET3_HUMAN:72:89_1hcq_B_1 | ModCRE | Homology model | GATTTAAAT | Region 72-89 · 1 3D model | Open · Scan | |
| TFS_sp_O43151_TET3_HUMAN:52:94_5w9s_C_1 | ModCRE | Homology model | CCCCCGGGGGGC | Region 52-94 · 1 3D model | Open · Scan | |
| TFS_sp_O43151_TET3_HUMAN:53:95_6asd_C_1 | ModCRE | Homology model | CGCCCCCCCCGC | Region 53-95 · 1 3D model | Open · Scan | |
| TFS_sp_O43151_TET3_HUMAN:55:79_3qmg_A_1 | ModCRE | Homology model | GGCCCCCGGGGC | Region 55-79 · 1 3D model | Open · Scan | |
| TFS_sp_O43151_TET3_HUMAN:55:79_3qmh_A_1 | ModCRE | Homology model | CGCCCGCGCGGG | Region 55-79 · 1 3D model | Open · Scan | |
| TFS_sp_O43151_TET3_HUMAN:55:79_3qmi_A_1 | ModCRE | Homology model | TAGCCCGGGGGG | Region 55-79 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
1795 aa
52-95
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models
6 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 52-956 models · 6 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_sp_O43151_TET3_HUMAN:72:89_1hcq_B_1 | 1hcq | 72-89 | View model · PDB |
| Predicted = Low | TFS_sp_O43151_TET3_HUMAN:52:94_5w9s_C_1 | 5w9s | 52-94 | View model · PDB |
| Predicted = Low | TFS_sp_O43151_TET3_HUMAN:53:95_6asd_C_1 | 6asd | 53-95 | View model · PDB |
| Predicted = Low | TFS_sp_O43151_TET3_HUMAN:55:79_3qmg_A_1 | 3qmg | 55-79 | View model · PDB |
| Predicted = Low | TFS_sp_O43151_TET3_HUMAN:55:79_3qmh_A_1 | 3qmh | 55-79 | View model · PDB |
| Predicted = Low | TFS_sp_O43151_TET3_HUMAN:55:79_3qmi_A_1 | 3qmi | 55-79 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 5w9s | 52:95 | 52 | 94 | P:C · DNA:A,B | 72.7% / 77.3% | 97 | View · PDB TFS_sp_O43151_TET3_HUMAN:52:94_5w9s_C_1 |
| 2 | 6asd | 52:95 | 53 | 95 | P:C · DNA:A,B | 70.5% / 79.5% | 97 | View · PDB TFS_sp_O43151_TET3_HUMAN:53:95_6asd_C_1 |
| 1 | 1hcq | 52:95 | 72,72 | 89,89 | P:A,B · DNA:C,D | 57.9% / 63.2% | 24,25 | View · PDB DIMER_sp_O43151_TET3_HUMAN:72:89_1hcq_B_1 |
| 3 | 3qmh | 52:95 | 55 | 79 | P:A · DNA:B,C | 48.0% / 64.0% | 47 | View · PDB TFS_sp_O43151_TET3_HUMAN:55:79_3qmh_A_1 |
| 4 | 3qmi | 52:95 | 55 | 79 | P:A · DNA:B,C | 48.0% / 64.0% | 48 | View · PDB TFS_sp_O43151_TET3_HUMAN:55:79_3qmi_A_1 |
| 5 | 3qmg | 52:95 | 55 | 79 | P:A · DNA:B,C | 48.0% / 64.0% | 48 | View · PDB TFS_sp_O43151_TET3_HUMAN:55:79_3qmg_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 51-89 | PF02008 | CXXC zinc finger domain | overlaps 52-95 |
| 985-1697 | PF12851 | Oxygenase domain of the 2OGFeDO superfamily | No overlap with loaded model regions |