ModCRE DB

Transcription factor

O43248 - HOXC11

Homeobox protein Hox-C11 (Homeobox protein Hox-3H)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 304 aa

15 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known15
MotifPredictionSourceDNA bindingSupportLogoActions
MA0651.1 Known JASPAR GGTCGTAAAAT Direct PWM Open · Scan
MA0651.2 Known JASPAR AGGTCGTAAAAA Direct PWM Open · Scan
MA0651.3 Known JASPAR AGGTCGTAAAA Direct PWM Open · Scan
M03131_2.00 Known CisBP ATTTTACGACC Direct PWM Open · Scan
M03132_2.00 Known CisBP TTTTTATTGCT Direct PWM Open · Scan
M03133_2.00 Known CisBP GGTCGTAAAAT Direct PWM Open · Scan
M03134_2.00 Known CisBP TTTTTATTGCT Direct PWM Open · Scan
M05075_2.00 Known CisBP GTTTTACGACC Direct PWM Open · Scan
M05076_2.00 Known CisBP GTTTTATGACC Direct PWM Open · Scan
M05077_2.00 Known CisBP GGTCGTAAAAC Direct PWM Open · Scan
M05078_2.00 Known CisBP GTTTTATGACC Direct PWM Open · Scan
M05079_2.00 Known CisBP GGTCGTAAAAC Direct PWM Open · Scan
M05080_2.00 Known CisBP GTTTTATGGCC Direct PWM Open · Scan
M05081_2.00 Known CisBP GGTCGTAAAAC Direct PWM Open · Scan
M05082_2.00 Known CisBP TTTTTATGGCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 304 aa
233-288

Region 233-288 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
3RKQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 233-2881 model
Actions
Predicted = Low DIMER_O43248:233:288_3rkq_A_1 3rkq 233-288 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
42-161PF12045Protein of unknown function (DUF3528)No overlap with loaded model regions
233-289PF00046Homeodomainoverlaps 233-288