ModCRE DB

Transcription factor

O43316 - PAX4

Paired box protein Pax-4

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 350 aa

22 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known22
MotifPredictionSourceDNA bindingSupportLogoActions
MA0068.2 Known JASPAR CTAATTAG Direct PWM Open · Scan
M00347_2.00 Known CisBP CGAATTA Direct PWM Open · Scan
M00348_2.00 Known CisBP CTAATTAG Direct PWM Open · Scan
M00349_2.00 Known CisBP CTAATTAGC Direct PWM Open · Scan
M00350_2.00 Known CisBP CGAATTAG Direct PWM Open · Scan
M00351_2.00 Known CisBP CGAATTAG Direct PWM Open · Scan
M03295_2.00 Known CisBP CTAATTAG Direct PWM Open · Scan
M03296_2.00 Known CisBP CTAATTAG Direct PWM Open · Scan
M03883_2.00 Known CisBP CGTCACGCATGAGTG Direct PWM Open · Scan
M03884_2.00 Known CisBP CTAATTAACTAATTAG Direct PWM Open · Scan
M05430_2.00 Known CisBP AAATTAGGACTGGCTAATTA Direct PWM Open · Scan
M05431_2.00 Known CisBP CATTTCACGCATCAATGCGCA Direct PWM Open · Scan
M05432_2.00 Known CisBP TTCACGCATGAATGCACA Direct PWM Open · Scan
M05433_2.00 Known CisBP TCACGCTAATTAG Direct PWM Open · Scan
M05434_2.00 Known CisBP TAATTAGCTAATTA Direct PWM Open · Scan
M05435_2.00 Known CisBP GATTTCACGCATGAATGCACA Direct PWM Open · Scan
M05436_2.00 Known CisBP TTTACGCATGAATGCACA Direct PWM Open · Scan
M05437_2.00 Known CisBP TTACGCTAATTAG Direct PWM Open · Scan
M10811_2.00 Known CisBP GGCCGCGCACGCATGACCGCC Direct PWM Open · Scan
M10812_2.00 Known CisBP GAATAATTACC Direct PWM Open · Scan
M10813_2.00 Known CisBP AATCCCCACCCC Direct PWM Open · Scan
M10814_2.00 Known CisBP AAAAATTAACCCAAAATCCAACCTCACCCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 350 aa
172-224

Region 172-224 0 PWM

Residues
53 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
6A8R
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 172-2241 model
Actions
Predicted = Low DIMER_O43316:172:224_6a8r_B_1 6a8r 172-224 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
7-129PF00292'Paired box' domainNo overlap with loaded model regions
172-227PF00046Homeodomainoverlaps 172-224