ModCRE DB

Transcription factor

O43365 - HOXA3

Homeobox protein Hox-A3 (Homeobox protein Hox-1E)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 443 aa

127 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2
MotifPredictionSourceDNA bindingSupportLogoActions
MA2119.1 Known JASPAR GTAATTA Direct PWM Open · Scan
M10651_2.00 Known CisBP CCTAATTGG Direct PWM Open · Scan
Nearest Neighbor (>70%)19
MotifPredictionSourceDNA bindingSupportLogoActions
M00532_2.00 NN 70+% CisBP TTAATGACC 93.4% identity Open · Scan
MA0900.1 NN 70+% JASPAR CCTAATTACC 77.5% identity Open · Scan
MA0902.1 NN 70+% JASPAR AGTAATTAAC 77.1% identity Open · Scan
M02166_2.00 NN 70+% CisBP CTAATTAC 75.4% identity Open · Scan
M09204_2.00 NN 70+% CisBP TTAATGGC 75.0% identity Open · Scan
MA1499.1 NN 70+% JASPAR ATCATTAG 75.0% identity Open · Scan
MA1504.1 NN 70+% JASPAR GTCATTAA 74.1% identity Open · Scan
M06227_2.00 NN 70+% CisBP TTAATTAT 73.3% identity Open · Scan
MA1496.1 NN 70+% JASPAR GTCATTAG 73.3% identity Open · Scan
M06261_2.00 NN 70+% CisBP TTAATTA 72.2% identity Open · Scan
M00476_2.00 NN 70+% CisBP TTAATGGCC 71.6% identity Open · Scan
M00494_2.00 NN 70+% CisBP TTAATTACC 71.6% identity Open · Scan
MA1497.1 NN 70+% JASPAR GGTAATTAAC 71.6% identity Open · Scan
M06248_2.00 NN 70+% CisBP TAATTGCC 71.1% identity Open · Scan
MA0132.1 NN 70+% JASPAR CTAATT 70.4% identity Open · Scan
MA0132.2 NN 70+% JASPAR GTAATTAG 70.4% identity Open · Scan
MA0158.1 NN 70+% JASPAR CACTAATT 70.0% identity Open · Scan
MA0904.1 NN 70+% JASPAR ACGGTAATTAGCTCAT 70.0% identity Open · Scan
MA0904.2 NN 70+% JASPAR GTAATTAC 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)106
MotifPredictionSourceDNA bindingSupportLogoActions
MA1498.1 NN 70-40% JASPAR GCAATTAC 69.8% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 69.3% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 68.9% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 68.2% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 68.2% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 68.1% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 67.7% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 67.7% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 67.7% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 67.1% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 66.1% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 66.1% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 66.1% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 66.1% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 66.1% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 66.1% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 66.1% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 66.1% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 65.5% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 65.5% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 64.6% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 64.6% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 63.8% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 63.6% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 63.6% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 63.6% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 62.8% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 62.0% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 61.6% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 61.2% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 61.2% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 61.1% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 61.0% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 61.0% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 61.0% identity Open · Scan
M00492_2.00 NN 70-40% CisBP TAATTAGC 59.3% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 59.3% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 59.3% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 59.3% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 59.3% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 59.3% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 59.2% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 59.2% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 59.2% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 59.2% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 58.6% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 57.8% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 57.8% identity Open · Scan
M03276_2.00 NN 70-40% CisBP GCTAATTAGC 57.8% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 57.8% identity Open · Scan
MA0642.1 NN 70-40% JASPAR CCCAATTAGC 57.8% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 57.8% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 57.8% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 57.8% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 57.6% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 57.1% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 57.1% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 56.1% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 56.1% identity Open · Scan
MA0027.1 NN 70-40% JASPAR AAGTAGTGCCC 56.1% identity Open · Scan
MA0027.2 NN 70-40% JASPAR CTAATTAG 56.1% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 56.1% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 56.0% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 55.9% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 55.9% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 55.7% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 55.1% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 55.1% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 55.0% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 54.8% identity Open · Scan
M00464_2.00 NN 70-40% CisBP CTAATTACC 54.2% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 54.2% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 54.2% identity Open · Scan
MA0723.1 NN 70-40% JASPAR CTAATTAC 54.2% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 53.8% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 52.9% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 52.8% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 52.6% identity Open · Scan
M03777_2.00 NN 70-40% CisBP GTAATTGC 52.6% identity Open · Scan
M06224_2.00 NN 70-40% CisBP ATCATAAAA 52.6% identity Open · Scan
MA0651.1 NN 70-40% JASPAR GGTCGTAAAAT 52.6% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 52.6% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 52.3% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 51.9% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 51.9% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 51.7% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 51.7% identity Open · Scan
M01503_2.00 NN 70-40% CisBP TTAATTAC 50.8% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 50.8% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 50.8% identity Open · Scan
M10805_2.00 NN 70-40% CisBP GGACAAATAGCCC 50.8% identity Open · Scan
MA0124.1 NN 70-40% JASPAR ATACTTA 50.8% identity Open · Scan
MA0124.2 NN 70-40% JASPAR ACCACTTAA 50.8% identity Open · Scan
MA0709.1 NN 70-40% JASPAR CCAATTAA 50.8% identity Open · Scan
MA0880.1 NN 70-40% JASPAR CCAATTAC 50.8% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 50.7% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 50.7% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 50.7% identity Open · Scan
MA0122.1 NN 70-40% JASPAR TTAAGTGGA 50.7% identity Open · Scan
MA0122.2 NN 70-40% JASPAR ACCACTTAA 50.7% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 50.7% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 50.6% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 50.2% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 50.0% identity Open · Scan
M06378_2.00 NN 70-40% CisBP GCTCAAGTGC 50.0% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 443 aa
187-249

Region 187-249 0 PWM

Residues
63 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJT
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 187-2491 model
Actions
Predicted = Low DIMER_O43365:187:249_5zjt_A_1 5zjt 187-249 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
192-248PF00046Homeodomainoverlaps 187-249
377-441PF13293Domain of unknown function (DUF4074)No overlap with loaded model regions