ModCRE DB

Transcription factor

O43623 - SNAI2

Zinc finger protein SNAI2 (Neural crest transcription factor Slug) (Protein snail homolog 2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 268 aa

13 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known13
MotifPredictionSourceDNA bindingSupportLogoActions
MA0745.1 Known JASPAR AACAGGTGT Direct PWM Open · Scan
MA0745.2 Known JASPAR ATGCACCTGTCAT Direct PWM Open · Scan
MA0745.3 Known JASPAR GCACCTGT Direct PWM Open · Scan
M00220_2.00 Known CisBP GCACCTGT Direct PWM Open · Scan
M00221_2.00 Known CisBP CACCTGT Direct PWM Open · Scan
M00222_2.00 Known CisBP CACCTGTTAT Direct PWM Open · Scan
M02873_2.00 Known CisBP ACACCTGTT Direct PWM Open · Scan
M04392_2.00 Known CisBP TGCACCTGTT Direct PWM Open · Scan
M04393_2.00 Known CisBP TGCACCTGTT Direct PWM Open · Scan
M04394_2.00 Known CisBP TGCACCTGTT Direct PWM Open · Scan
M04395_2.00 Known CisBP CGCACCTGTC Direct PWM Open · Scan
M08853_2.00 Known CisBP TGCACCTGCC Direct PWM Open · Scan
SNAI2_HUMAN.H11MO.0.A Known HOCOMOCO GGCAGGTGCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 268 aa
125-262

Region 125-262 0 PWM

Residues
138 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 125-2621 model
Actions
Predicted = Low TFS_O43623:125:262_5wjq_D_1 5wjq 125-262 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
128-150PF00096Zinc finger, C2H2 typeoverlaps 125-262
159-181PF00096Zinc finger, C2H2 typeoverlaps 125-262
186-207PF00096Zinc finger, C2H2 typeoverlaps 125-262
213-235PF00096Zinc finger, C2H2 typeoverlaps 125-262
241-260PF00096Zinc finger, C2H2 typeoverlaps 125-262