ModCRE DB

Transcription factor

O60587 - FTF

Alpha1-fetoprotein transcription factor short variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 323 aa

84 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)5
MotifPredictionSourceDNA bindingSupportLogoActions
M05590_2.00 NN 70+% CisBP TTCAAGGTCAC 98.9% identity Open · Scan
M09616_2.00 NN 70+% CisBP TTCAAGGTCA 91.7% identity Open · Scan
MA0505.1 NN 70+% JASPAR AAGTTCAAGGTCAGC 91.7% identity Open · Scan
M06417_2.00 NN 70+% CisBP CAGTCCGAAGGTCACCGC 80.7% identity Open · Scan
M08226_2.00 NN 70+% CisBP CAAGGTCA 74.5% identity Open · Scan
Nearest Neighbor (70% - 40%)79
MotifPredictionSourceDNA bindingSupportLogoActions
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 62.5% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 61.3% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 61.3% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 60.9% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 60.8% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 60.5% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 60.5% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 60.5% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 60.5% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 60.0% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 60.0% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 60.0% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 60.0% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 60.0% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 60.0% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 59.3% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 59.2% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 59.2% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 59.2% identity Open · Scan
M09277_2.00 NN 70-40% CisBP GGGGGATCAAGAGGTCAAGG 58.5% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 58.3% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 58.1% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 58.1% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 58.1% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 58.1% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 57.8% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 57.8% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 57.8% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 57.5% identity Open · Scan
M03392_2.00 NN 70-40% CisBP AAGGTCAACTAAAGGTCA 57.1% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 57.1% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 57.1% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 56.9% identity Open · Scan
M05886_2.00 NN 70-40% CisBP AGTACATTTTGTTCT 56.9% identity Open · Scan
M07987_2.00 NN 70-40% CisBP GCCCAGAACATTCTGTTCCCT 56.9% identity Open · Scan
MA0113.1 NN 70-40% JASPAR GGGAACATTATGTCCTAA 56.9% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 56.9% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 56.9% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 56.9% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 56.7% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 56.7% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 56.7% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 56.7% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 56.5% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 56.5% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 56.5% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 56.5% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 56.4% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 56.4% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 56.4% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 55.6% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 55.2% identity Open · Scan
MA1534.1 NN 70-40% JASPAR ATGAACTTT 55.2% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 55.0% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 54.5% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 54.4% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 53.9% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 53.9% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 53.9% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 53.9% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 53.9% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 53.9% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 53.2% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 53.2% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 53.2% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 53.0% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 52.5% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 52.5% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 52.1% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 52.1% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 51.4% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 51.3% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 51.2% identity Open · Scan
M03940_2.00 NN 70-40% CisBP TAAGTGCACGTGTACCCA 50.7% identity Open · Scan
MA0007.1 NN 70-40% JASPAR ATAAGAACACCCTGTACCCGCC 50.6% identity Open · Scan
MA0007.2 NN 70-40% JASPAR AAGAACAGAATGTTC 50.6% identity Open · Scan
MA0007.3 NN 70-40% JASPAR GGGAACACGGTGTACCC 50.6% identity Open · Scan
MA0494.1 NN 70-40% JASPAR TGACCTAAAGTAACCTCTG 50.6% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 50.5% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 323 aa
3-80

Region 3-80 0 PWM

Residues
78 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1BY4
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 3-801 model
Actions
Predicted = Low DIMER_O60587:3:80_1by4_B_1 1by4 3-80 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
5-72PF00105Double treble clef zinc finger, C4 typeoverlaps 3-80