ModCRE DB

Transcription factor

O60663 - LMX1B

LIM homeobox transcription factor 1-beta (LIM/homeobox protein 1.2) (LMX-1.2) (LIM/homeobox protein LMX1B)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 402 aa

11 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known11
MotifPredictionSourceDNA bindingSupportLogoActions
MA0703.1 Known JASPAR TTAATTAA Direct PWM Open · Scan
MA0703.2 Known JASPAR ATTTTAATTAA Direct PWM Open · Scan
MA0703.3 Known JASPAR TTAATTAA Direct PWM Open · Scan
M03153_2.00 Known CisBP TTAATTAA Direct PWM Open · Scan
M03154_2.00 Known CisBP TTAATTAG Direct PWM Open · Scan
M05153_2.00 Known CisBP ATTTTAATTAA Direct PWM Open · Scan
M05154_2.00 Known CisBP ATTTTAATTAA Direct PWM Open · Scan
M05155_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M05156_2.00 Known CisBP ATTTTAATTAA Direct PWM Open · Scan
M05157_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M05158_2.00 Known CisBP ATTTTAATTAA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 402 aa
218-276

Region 218-276 0 PWM

Residues
59 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 218-2761 model
Actions
Predicted = Low DIMER_O60663:218:276_1fjl_A_1 1fjl 218-276 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
56-111PF00412LIM domainNo overlap with loaded model regions
115-172PF00412LIM domainNo overlap with loaded model regions
220-276PF00046Homeodomainoverlaps 218-276