ModCRE DB

Transcription factor

O60863

Homeobox protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 46 aa

76 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0618.1 NN 70+% JASPAR TTAATTAG 97.8% identity Open · Scan
M03815_2.00 NN 70+% CisBP TTAATTAG 84.7% identity Open · Scan
M02148_2.00 NN 70+% CisBP CTAATTAG 75.5% identity Open · Scan
Nearest Neighbor (70% - 40%)73
MotifPredictionSourceDNA bindingSupportLogoActions
M02170_2.00 NN 70-40% CisBP TTAATTAG 66.6% identity Open · Scan
M00465_2.00 NN 70-40% CisBP TTAATTAG 63.0% identity Open · Scan
MA0699.1 NN 70-40% JASPAR GCCAATTAGC 63.0% identity Open · Scan
MA0119.1 NN 70-40% JASPAR TGGCACCATGCCAA 60.8% identity Open · Scan
M00457_2.00 NN 70-40% CisBP TTAATTGCT 60.0% identity Open · Scan
MA1471.1 NN 70-40% JASPAR AAAAACCATTAC 60.0% identity Open · Scan
M06290_2.00 NN 70-40% CisBP TTTAATTA 58.6% identity Open · Scan
M01244_2.00 NN 70-40% CisBP ATTAATTAC 57.7% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 57.7% identity Open · Scan
M06359_2.00 NN 70-40% CisBP TTTAATTA 57.7% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 57.7% identity Open · Scan
MA0063.1 NN 70-40% JASPAR TTAATTG 57.7% identity Open · Scan
MA0063.2 NN 70-40% JASPAR ACCACTCAAAA 57.7% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 57.7% identity Open · Scan
M00376_2.00 NN 70-40% CisBP TCAAGTGCTT 56.8% identity Open · Scan
M00526_2.00 NN 70-40% CisBP ATTAATTA 56.5% identity Open · Scan
MA1577.1 NN 70-40% JASPAR CTAATTAG 56.5% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 55.5% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 54.3% identity Open · Scan
M03810_2.00 NN 70-40% CisBP GCTAAACGGT 54.3% identity Open · Scan
MA0877.1 NN 70-40% JASPAR GCTAATTGCT 54.3% identity Open · Scan
MA0877.2 NN 70-40% JASPAR CTAAACGG 54.3% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 54.3% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 54.3% identity Open · Scan
M02128_2.00 NN 70-40% CisBP ATTAATTA 53.3% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 53.3% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 53.3% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 53.3% identity Open · Scan
M06286_2.00 NN 70-40% CisBP CTTAAGTG 53.3% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 53.3% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 53.3% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 53.3% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 53.3% identity Open · Scan
M00385_2.00 NN 70-40% CisBP TTAAGTGG 52.2% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 52.2% identity Open · Scan
M03854_2.00 NN 70-40% CisBP GTGAAGTGG 52.2% identity Open · Scan
M06378_2.00 NN 70-40% CisBP GCTCAAGTGC 52.2% identity Open · Scan
M09146_2.00 NN 70-40% CisBP CTTGAGTGGC 52.2% identity Open · Scan
MA0673.1 NN 70-40% JASPAR CCACTTGAA 52.2% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 52.1% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 52.1% identity Open · Scan
M06339_2.00 NN 70-40% CisBP TTTAATTGG 52.1% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 52.1% identity Open · Scan
MA0635.1 NN 70-40% JASPAR GCTAAACGGT 52.1% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 52.1% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 52.1% identity Open · Scan
M00451_2.00 NN 70-40% CisBP ATTAATTA 51.1% identity Open · Scan
M00492_2.00 NN 70-40% CisBP TAATTAGC 51.1% identity Open · Scan
M00497_2.00 NN 70-40% CisBP TTAAGTGGT 51.1% identity Open · Scan
M05042_2.00 NN 70-40% CisBP GTCAAGTGGT 51.1% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 51.1% identity Open · Scan
M06326_2.00 NN 70-40% CisBP TTAATT 51.1% identity Open · Scan
M06489_2.00 NN 70-40% CisBP TTAATTA 51.1% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 51.1% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 51.1% identity Open · Scan
MA0672.1 NN 70-40% JASPAR ACCACTTGAA 51.1% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 51.1% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 50.0% identity Open · Scan
M00438_2.00 NN 70-40% CisBP TTTAAGTGC 50.0% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 50.0% identity Open · Scan
M02181_2.00 NN 70-40% CisBP TTAAGTGGT 50.0% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 50.0% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 50.0% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 50.0% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 50.0% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 50.0% identity Open · Scan
MA0122.1 NN 70-40% JASPAR TTAAGTGGA 50.0% identity Open · Scan
MA0122.2 NN 70-40% JASPAR ACCACTTAA 50.0% identity Open · Scan
MA0124.1 NN 70-40% JASPAR ATACTTA 50.0% identity Open · Scan
MA0124.2 NN 70-40% JASPAR ACCACTTAA 50.0% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 50.0% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 50.0% identity Open · Scan
MA1645.1 NN 70-40% JASPAR TAACCACTCAAGAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 46 aa
2-46

Region 2-46 0 PWM

Residues
45 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1B72
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 2-461 model
Actions
Predicted = Low DIMER_O60863:2:46_1b72_A_1 1b72 2-46 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-46PF00046Homeodomainoverlaps 2-46