ModCRE DB

Transcription factor

O75132 - ZBED4

Zinc finger BED domain-containing protein 4

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1171 aa

6 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
MA2328.1 Known JASPAR CCCGCCCCGC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_O75132_ZBED4_HUMAN:859:903_5edn_A_1 ModCRE Homology model GCGTCTTATAGTATTAAA Region 859-903 · 1 3D model Open · Scan
TFS_sp_O75132_ZBED4_HUMAN:859:903_5eg0_B_1 ModCRE Homology model CCTCCCTTCATGAG Region 859-903 · 1 3D model Open · Scan
TFS_sp_O75132_ZBED4_HUMAN:859:903_5ego_B_1 ModCRE Homology model GGACCTTATATTTTG Region 859-903 · 1 3D model Open · Scan
TFS_sp_O75132_ZBED4_HUMAN:859:903_5no6_A_1 ModCRE Homology model CTTTAATTTTTAAAAAT Region 859-903 · 1 3D model Open · Scan
TFS_sp_O75132_ZBED4_HUMAN:859:903_7psx_A_1 ModCRE Homology model CCCCATTAAATTTTTTAC Region 859-903 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1171 aa
859-903

Region 859-903 5 PWM

Residues
45 aa
Domains
PF27039 · ZBED1 RNase-like helical domain
3D models
5 active PDBs · 5 summary rows
Templates
5EDN, 5EG0, 5EGO, 5NO6, 7PSX
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 859-9035 models · 5 summary rows
Actions
Predicted = Low TFS_sp_O75132_ZBED4_HUMAN:859:903_5edn_A_1 5edn 859-903 View model · PDB
Predicted = Low TFS_sp_O75132_ZBED4_HUMAN:859:903_5eg0_B_1 5eg0 859-903 View model · PDB
Predicted = Low TFS_sp_O75132_ZBED4_HUMAN:859:903_5ego_B_1 5ego 859-903 View model · PDB
Predicted = Low TFS_sp_O75132_ZBED4_HUMAN:859:903_5no6_A_1 5no6 859-903 View model · PDB
Predicted = Low TFS_sp_O75132_ZBED4_HUMAN:859:903_7psx_A_1 7psx 859-903 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5no6 859:903 859 903 P:A · DNA:C,F 37.8% / 53.3% 70 View · PDB TFS_sp_O75132_ZBED4_HUMAN:859:903_5no6_A_1
2 5edn 859:903 859 903 P:A · DNA:C,F 37.8% / 53.3% 73 View · PDB TFS_sp_O75132_ZBED4_HUMAN:859:903_5edn_A_1
3 5ego 859:903 859 903 P:B · DNA:D,E 37.8% / 53.3% 69 View · PDB TFS_sp_O75132_ZBED4_HUMAN:859:903_5ego_B_1
4 7psx 859:903 859 903 P:A · DNA:C,F 37.8% / 53.3% 72 View · PDB TFS_sp_O75132_ZBED4_HUMAN:859:903_7psx_A_1
5 5eg0 859:903 859 903 P:B · DNA:D,E 37.8% / 53.3% 72 View · PDB TFS_sp_O75132_ZBED4_HUMAN:859:903_5eg0_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
118-166PF02892BED zinc fingerNo overlap with loaded model regions
288-336PF02892BED zinc fingerNo overlap with loaded model regions
459-506PF02892BED zinc fingerNo overlap with loaded model regions
561-609PF02892BED zinc fingerNo overlap with loaded model regions
731-816PF27041ZBED1 RNase-like domainNo overlap with loaded model regions
825-935PF27039ZBED1 RNase-like helical domainoverlaps 859-903
1088-1163PF05699hAT family C-terminal dimerisation regionNo overlap with loaded model regions